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[185687_at]

Description T09E11.10 /REP_DB=WormBase Gene ID /WP=CE13515 /TR=O02310 /GB=CAB03537.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 9.2
(-3)
A 		16.7
(-2.4)
A 		11.3
(-2.8)
A 		82.2
(3)
A 		73
B 18.4
(-2)
A 		22.9
(-1.4)
A 		11.6
(-3)
A 		53.7
(3)
A 		42
C 30.2
(2)
A 		2.9
(-3)
A 		4.5
(-2.7)
A 		35.9
(3)
A 		33
avr 19.3
(-1.7) 		14.2
(-2.4) 		9.1
(-3) 		57.3
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 58.9
(3)
A 		6.9
(-3)
A 		6.8
(-3)
A 		31.7
(-0.1)
A 		15.8
(-1.9)
A 		6.5
(-3)
A 		52
B 17.6
(-1)
A 		14.2
(-1.4)
A 		49.8
(3)
A 		3.6
(-2.7)
A 		6.7
(-2.4)
A 		1.5
(-3)
A 		48
C 20.7
(1.1)
A 		13.3
(-0.7)
A 		3.5
(-3)
A 		21.1
(1.2)
A 		28.8
(3)
A 		19.1
(0.7)
A 		25
avr 32.4
(3) 		11.5
(-2.4) 		20
(-0.2) 		18.8
(-0.5) 		17.1
(-0.9) 		9
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.3
(-2.8)
A 		3.6
(-2.6)
A 		3
(-3)
A 		12
(3)
A 		9
B 5.9
(-0.8)
A 		5.6
(-1)
A 		2.7
(-3)
A 		11.4
(3)
A 		9
C 10
(3)
A 		0.8
(-3)
A 		1.6
(-2.5)
A 		6
(0.4)
A 		9
avr 6.4
(0.2) 		3.3
(-2.3) 		2.4
(-3) 		9.8
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 10.9
(3)
A 		2.4
(-2.4)
A 		1.5
(-3)
A 		8
(1.1)
A 		4.8
(-0.9)
A 		1.6
(-2.9)
A 		9
B 6.1
(-0.1)
A 		4.7
(-0.9)
A 		12.1
(3)
A 		1
(-2.8)
A 		2.7
(-1.9)
A 		0.6
(-3)
A 		12
C 7.7
(1.9)
A 		4
(-0.8)
A 		0.9
(-3)
A 		4.2
(-0.6)
A 		9.3
(3)
A 		6.4
(0.9)
A 		8
avr 8.2
(3) 		3.7
(-2.1) 		4.8
(-0.8) 		4.4
(-1.3) 		5.6
(0.1) 		2.9
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185687_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1815
Sequence Type Exemplar sequence
Representative Public ID T09E11.10 NCBI
Target Description T09E11.10 /REP_DB=WormBase Gene ID /WP=CE13515 /TR=O02310 /GB=CAB03537.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060723(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060723 NCBI Caenorhabditis elegans T09E11.10 (T09E11.10) mRNA, complete cds. 11/11 None
SNAP00000042461 ENSEMBL cdna:SNAP chromosome:CEL140:I:12353941:12355220:-1 11/11 None
GENEFINDER00000042473 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12353941:12357893:-1 11/11 None
T09E11.10 ENSEMBL cdna:known chromosome:CEL140:I:12353941:12355387:-1 gene:T09E11.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12353871-12355318(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T09E11.10
Entrez Gene 188338 Entrez gene
SwissProt O02310 EMBL-EBI
WormBase CE13515 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6486 protein amino acid glycosylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8378 galactosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03537 Hypothetical protein T09E11.10 [Caenorhabditis elegans] ref|NP_493124.1| T09E11.10 [Caenorhabditis elegans] 0.0
blast CAB03536 Hypothetical protein T09E11.9 [Caenorhabditis elegans] ref|NP_493125.1| T09E11.9 [Caenorhabditis elegans] 0.0
blast CAB03537 Hypothetical protein T09E11.10 [Caenorhabditis elegans] ref|NP_493124.1| T09E11.10 [Caenorhabditis elegans] 1.0E-166
blast CAE59208 Hypothetical protein CBG02521 [Caenorhabditis briggsae] 1.0E-147
blast CAB05807 Hypothetical protein T09F5.1 [Caenorhabditis elegans] ref|NP_506737.1| T09F5.1 [Caenorhabditis elegans] 2.0E-76
blast CAB04109 Hypothetical protein F14B6.6a [Caenorhabditis elegans] ref|NP_001021108.1| F14B6.6a [Caenorhabditis elegans] 6.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 6.4E-95
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 6.4E-95
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 8.5E-110
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 6.4E-95
Sequence
Target Sequence 
>C. ELEGANS:185687_AT
gaagccgcgctttacggggatatggtggtgacaaatattgaggattctttttctaaagtc
gcatttaagatgctatcaatgctgctctacggtttctccaaggtcccatcggcaaaattc
attggaaaagttgatgatgacgtgcttttctacccaaacgtacttttatcttacatggat
aacaacactgacacaatacatccacaaggctcaagaatgtacggacacattactgaaacc
cgtttcatcacggcgggtataccaacgggagcagagtgttgtgaaaagtttgattcagac
tcaaaatgtgcgaactatgtaacttttcttggaggctcgtttcttatgtttacacgacag
gcggtagaaggcgtgctcatggcttcgaagcacaggaagttccacagaatcgacgacaca
atggtcactggctaccttgctgatgacgttggagctcagcgagtaaacatgacaatgatg
tttatgggatatgaaccgacaaaggagccaatattgttctcatcacatattccgctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCGCGCTTTACGGGGATATGG 323 343 406 Antisense
TATCAATGCTGCTCTACGGTTTCTC 61 661 479 Antisense
TTCTCCAAGGTCCCATCGGCAAAAT 506 693 499 Antisense
TGATGATGACGTGCTTTTCTACCCA 576 565 537 Antisense
GTTTCATCACGGCGGGTATACCAAC 432 447 647 Antisense
GGAGGCTCGTTTCTTATGTTTACAC 577 513 736 Antisense
AGGCGGTAGAAGGCGTGCTCATGGC 18 53 764 Antisense
GGAAGTTCCACAGAATCGACGACAC 557 531 800 Antisense
GACACAATGGTCACTGGCTACCTTG 189 359 820 Antisense
TGGCTACCTTGCTGATGACGTTGGA 292 545 834 Antisense
TGTTCTCATCACATATTCCGCTGAA 257 563 920 Antisense
Sequence Source Affymetrix Proprietary Database