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[185686_at] 7TM chemoreceptor, srab family

Description C36C5.10 /REP_DB=WormBase Gene ID /WP=CE08599 /TR=O16403 /GB=AAB65932.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 12      6grp_cgc > 93      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 23.5
(-1.6)
A 		17.1
(-2.5)
A 		13.2
(-3)
A 		58.5
(3)
A 		45
B 34.8
(1.4)
A 		4.5
(-2.9)
A 		3.9
(-3)
A 		46
(3)
P 		42
C 16.1
(-3)
A 		41.8
(0.1)
A 		17
(-2.9)
A 		66.3
(3)
P 		50
avr 24.8
(-1.2) 		21.1
(-1.7) 		11.4
(-3) 		56.9
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 2.6
(-3)
A 		3.7
(-2.8)
A 		23.4
(0.9)
A 		22.2
(0.7)
A 		19.4
(0.1)
A 		34.7
(3)
A 		32
B 12.2
(-1.9)
A 		19.2
(-0.9)
A 		30.3
(0.7)
A 		46.9
(3)
A 		4.1
(-3)
A 		15.9
(-1.3)
A 		43
C 30.4
(3)
A 		2.5
(-2.9)
A 		26.7
(2.2)
A 		7.8
(-1.8)
A 		2.2
(-3)
A 		11.1
(-1.1)
A 		28
avr 15.1
(-0.8) 		8.5
(-3) 		26.8
(3) 		25.6
(2.6) 		8.6
(-3) 		20.6
(1) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 8.5
(2.9)
A 		3.7
(-2.8)
A 		3.5
(-3)
A 		8.6
(3)
A 		5
B 11.1
(3)
A 		1.1
(-2.9)
A 		0.9
(-3)
A 		9.8
(2.2)
P 		10
C 5.3
(-3)
A 		12
(3)
A 		5.9
(-2.5)
A 		11.2
(2.3)
P 		7
avr 8.3
(1.5) 		5.6
(-1) 		3.4
(-3) 		9.9
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.5
(-3)
A 		1.3
(-2.4)
A 		5.1
(0.5)
A 		5.6
(0.8)
A 		5.8
(1)
A 		8.5
(3)
A 		8
B 4.3
(-1.5)
A 		6.4
(-0.4)
A 		7.4
(0.2)
A 		12.4
(3)
A 		1.7
(-3)
A 		5.9
(-0.6)
A 		11
C 11.3
(3)
A 		0.8
(-2.9)
A 		6.8
(0.5)
A 		1.6
(-2.5)
A 		0.7
(-3)
A 		3.7
(-1.3)
A 		11
avr 5.4
(1.3) 		2.8
(-2.8) 		6.4
(2.8) 		6.5
(3) 		2.7
(-3) 		6
(2.2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185686_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15401
Sequence Type Exemplar sequence
Representative Public ID C36C5.10 NCBI
Target Description C36C5.10 /REP_DB=WormBase Gene ID /WP=CE08599 /TR=O16403 /GB=AAB65932.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071465(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071465 NCBI Caenorhabditis elegans Serpentine Receptor, class AB (class A-like) family member (srab-6) (srab-6) mRNA, complete cds. 11/11 None
GENEFINDER00000036671 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3144962:3151789:-1 10/11 None
C36C5.10 ENSEMBL cdna:known chromosome:CEL140:V:3150315:3151789:-1 gene:C36C5.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3150314-3151789(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srab family
Gene Symbol srab-6
Ensembl C36C5.10
Entrez Gene 183266 Entrez gene
SwissProt O16403 EMBL-EBI
WormBase CE08599 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503866 Serpentine Receptor, class AB (class A-like) family member (srab-6) [Caenorhabditis elegans] gb|AAB65932.1| Serpentine receptor, class ab (class a-like) protein 6 [Caenorhabditis elegans] 1.0E-179
blast NP_503866 Serpentine Receptor, class AB (class A-like) family member (srab-6) [Caenorhabditis elegans] gb|AAB65932.1| Serpentine receptor, class ab (class a-like) protein 6 [Caenorhabditis elegans] 1.0E-170
blast NP_503864 Serpentine Receptor, class AB (class A-like) family member (srab-11) [Caenorhabditis elegans] gb|AAN73878.1| Serpentine receptor, class ab (class a-like) protein 11 [Caenorhabditis elegans] 1.0E-135
blast NP_503862 Serpentine Receptor, class AB (class A-like) family member (srab-9) [Caenorhabditis elegans] gb|AAN73876.2| Serpentine receptor, class ab (class a-like) protein 9 [Caenorhabditis elegans] pir||E88989 protein C36C5.6 [imported] - Caenorhabditis elegans 1.0E-114
blast NP_503867 Serpentine Receptor, class AB (class A-like) family member (srab-7) [Caenorhabditis elegans] gb|AAB65933.1| Serpentine receptor, class ab (class a-like) protein 7 [Caenorhabditis elegans] 1.0E-113
blast NP_503862 Serpentine Receptor, class AB (class A-like) family member (srab-9) [Caenorhabditis elegans] gb|AAN73876.2| Serpentine receptor, class ab (class a-like) protein 9 [Caenorhabditis elegans] pir||E88989 protein C36C5.6 [imported] - Caenorhabditis elegans 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 8.8E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503866.1 7 24-46,53-75,107-129,142-164,191-210,243-265,275-297
C36C5.10 7 24-46,53-75,107-129,142-164,191-210,243-265,275-297
GENEFINDER00000036671 13 24-46,53-75,107-129,142-164,191-210,243-265,275-297,356-378,393-412,553-575,595-617,654-676,686-708
Sequence
Target Sequence 
>C. ELEGANS:185686_AT
tgaacgatacgtcgctacagtccgctcttcaaaatatgaacattctagttgtttcctagg
attatgtatggcaattttacaattatcaattgccgcagtagcaaactactattctttttt
aagtttcccattttcacaacctgttatgaattactgtactgcagtaaaacctggttttgt
taccaatattgagaaagcatttattggctgcttaattattcaaataggtggaagaattat
ttttcactttttgtttaaattgaatgaggagctgagggctaagggattgaccgcaacact
ttcaaaccgattttctctagaacaaaatttgaaatcaatgaagacactaaaactattcgc
aaatatgcaatcggtttttgttgtcatacatattgtattttttctggtcattatgcagtt
tggggaacaaatgagtacctccacctatgtcgcgttcatcgaattgagcggatcttatcc
attatatgcagtgatctccatggtgatactcttcaaaagagcaaaggagaataaggtgaa
gatcaaaaaaacattgcaaagccacgtgaatgcggaccaaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACGATACGTCGCTACAGTCCGC 559 573 387 Antisense
TAAGTTTCCCATTTTCACAACCTGT 292 637 506 Antisense
AACCTGTTATGAATTACTGTACTGC 476 147 524 Antisense
GGGCTAAGGGATTGACCGCAACACT 89 493 662 Antisense
GCAACACTTTCAAACCGATTTTCTC 208 319 679 Antisense
GCAATCGGTTTTTGTTGTCATACAT 113 323 753 Antisense
CAAATGAGTACCTCCACCTATGTCG 44 193 814 Antisense
CCACCTATGTCGCGTTCATCGAATT 631 273 827 Antisense
GCGGATCTTATCCATTATATGCAGT 610 293 854 Antisense
GTGATCTCCATGGTGATACTCTTCA 39 485 877 Antisense
AAGCCACGTGAATGCGGACCAAAGT 530 147 945 Antisense
Sequence Source Affymetrix Proprietary Database