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[185685_at]

Description ZC513.10 /REP_DB=WormBase Gene ID /WP=CE15233 /TR=O45983 /GB=AAC48272.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 2.5
(-3)
A 		5.3
(0.8)
A 		3.9
(-1.1)
A 		6.9
(3)
A 		4
B 2.7
(-2)
A 		1.8
(-3)
A 		2
(-2.8)
A 		7.3
(3)
A 		6
C 1.5
(-3)
A 		2.7
(-2.7)
A 		4.5
(-2.3)
A 		27.9
(3)
A 		26
avr 2.2
(-3) 		3.3
(-2.4) 		3.5
(-2.3) 		14
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 4.3
(1.1)
A 		1.7
(-3)
A 		1.8
(-2.8)
A 		4.6
(1.6)
A 		3.5
(-0.2)
A 		5.5
(3)
A 		4
B 1.2
(-3)
A 		4.2
(-1.8)
A 		2.3
(-2.6)
A 		1.6
(-2.8)
A 		3.8
(-2)
A 		16.2
(3)
A 		15
C 4.3
(-2)
A 		2.7
(-2.7)
A 		2
(-3)
A 		2.1
(-3)
A 		3.5
(-2.3)
A 		15.4
(3)
A 		13
avr 3.3
(-2.3) 		2.9
(-2.5) 		2
(-3) 		2.8
(-2.5) 		3.6
(-2.1) 		12.4
(3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.9
(-3)
A 		1.2
(3)
A 		1
(-1)
A 		1
(-1)
A 		0
B 0.9
(-0.5)
A 		0.4
(-3)
A 		0.5
(-2.5)
A 		1.6
(3)
A 		1
C 0.5
(-3)
A 		0.8
(-2.6)
A 		1.6
(-1.4)
A 		4.7
(3)
A 		4
avr 0.8
(-3) 		0.8
(-3) 		1
(-2.3) 		2.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.8
(-0.3)
A 		0.6
(-1.7)
A 		0.4
(-3)
A 		1.2
(2.3)
A 		1
(1)
A 		1.3
(3)
A 		1
B 0.4
(-3)
A 		1.4
(-1.9)
A 		0.6
(-2.8)
A 		0.4
(-3)
A 		1.6
(-1.7)
A 		6
(3)
A 		6
C 1.6
(-1.5)
A 		0.8
(-2.5)
A 		0.5
(-2.9)
A 		0.4
(-3)
A 		1.1
(-2.1)
A 		5.2
(3)
A 		5
avr 0.9
(-2.4) 		0.9
(-2.4) 		0.5
(-3) 		0.7
(-2.7) 		1.2
(-1.9) 		4.2
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185685_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12062
Sequence Type Exemplar sequence
Representative Public ID ZC513.10 NCBI
Target Description ZC513.10 /REP_DB=WormBase Gene ID /WP=CE15233 /TR=O45983 /GB=AAC48272.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072678(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072678 NCBI Caenorhabditis elegans ZC513.10 (ZC513.10) mRNA, complete cds. 11/11 None
ZC513.10 ENSEMBL cdna:known chromosome:CEL140:V:8065838:8067736:-1 gene:ZC513.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035869 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8065838-8067737(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC513.10
Entrez Gene 191196 Entrez gene
SwissProt O45983 EMBL-EBI
WormBase CE15233 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48272 Hypothetical protein ZC513.10 [Caenorhabditis elegans] ref|NP_505079.1| ZC513.10 [Caenorhabditis elegans] 0.0
blast CAB07161 Hypothetical protein C06H5.1 [Caenorhabditis elegans] ref|NP_741646.1| C06H5.1 [Caenorhabditis elegans] 6.0E-44
blast AAB66158 Hypothetical protein T28C12.3 [Caenorhabditis elegans] ref|NP_504615.1| T28C12.3 [Caenorhabditis elegans] 3.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.4E-14
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-6
Sequence
Target Sequence 
>C. ELEGANS:185685_AT
atccgattgatcgattatccgcatgtggagtctctcatcaatttcattctacagttgaaa
atcaacgatctaatctaacggaatttaatatgttatttagaaacgaaataattcatttgt
atacaaacgatgatttggtgatatatcggaagtggctcaacgaatatcatatggatggat
gtccgcttttgaatgaccaaagattaaccttgaatgaatttgaagtcttattcgtggact
gtcagaaaaaagcagttgataccattgaatcagttcttaatcagattggaagcttgtcgg
caaaatgggtttcaatcaaaggcgcttcccccgtcaaaaccgccaaacttctacaacgct
tcgaaactggtgctctgaagaagttaaacatttgtattgattggtcctatgaagagtccg
ttgaacatctggtcggtcttgagcaatggaaagccgtgaaaactctttatttgtattctg
acttctatgggttcatcaagcatctcagacacctaaatacattgattgttgactgtgtgg
gcgaaactttatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCGATTGATCGATTATCCGCATG 275 37 500 Antisense
TATCCGCATGTGGAGTCTCTCATCA 500 657 515 Antisense
GTCTCTCATCAATTTCATTCTACAG 181 471 529 Antisense
GATGGATGTCCGCTTTTGAATGACC 466 407 673 Antisense
ATGGGTTTCAATCAAAGGCGCTTCC 489 49 804 Antisense
AACGCTTCGAAACTGGTGCTCTGAA 465 145 854 Antisense
GATTGGTCCTATGAAGAGTCCGTTG 305 435 898 Antisense
GAACATCTGGTCGGTCTTGAGCAAT 279 351 922 Antisense
GTATTCTGACTTCTATGGGTTCATC 107 453 972 Antisense
TGGGTTCATCAAGCATCTCAGACAC 115 555 987 Antisense
TTGACTGTGTGGGCGAAACTTTATC 410 701 1028 Antisense
Sequence Source Affymetrix Proprietary Database