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[185684_at]

Description K02E10.5 /REP_DB=WormBase Gene ID /WP=CE04697 /TR=Q21132 /GB=AAC47071.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 75.9
(0.1)
A 		27
(-2.1)
A 		8.2
(-3)
A 		137.7
(3)
A 		130
B 98.4
(1.7)
A 		55.4
(-0.8)
A 		17.9
(-3)
A 		121.2
(3)
P 		103
C 85.4
(2.1)
A 		60.3
(0.4)
A 		10.4
(-3)
A 		98.9
(3)
A 		89
avr 86.6
(1.2) 		47.6
(-1) 		12.2
(-3) 		119.3
(3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 56
(0.2)
A 		90.9
(3)
A 		35.8
(-1.4)
A 		84.3
(2.5)
A 		61.6
(0.7)
A 		15.9
(-3)
A 		75
B 53.1
(0.7)
A 		25.5
(-1.9)
A 		14.3
(-3)
A 		77.1
(3)
A 		69.3
(2.3)
A 		45.4
(-0)
A 		63
C 50.7
(-1.2)
A 		79.7
(3)
A 		65.3
(0.9)
A 		66.1
(1)
A 		38.7
(-3)
A 		39.2
(-2.9)
A 		41
avr 53.3
(-0.2) 		65.4
(1.5) 		38.5
(-2.3) 		75.8
(3) 		56.5
(0.3) 		33.5
(-3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 27.6
(3)
A 		5.9
(-2.1)
A 		2.2
(-3)
A 		20.2
(1.3)
A 		25
B 31.4
(3)
A 		13.7
(-0.9)
A 		4.1
(-3)
A 		25.8
(1.8)
P 		27
C 28.3
(3)
A 		17.3
(0.3)
A 		3.6
(-3)
A 		16.7
(0.2)
A 		25
avr 29.1
(3) 		12.3
(-0.9) 		3.3
(-3) 		20.9
(1.1) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 10.3
(-1.6)
A 		32.3
(3)
A 		7.8
(-2.2)
A 		21.4
(0.7)
A 		18.6
(0.1)
A 		3.9
(-3)
A 		28
B 18.5
(0.6)
A 		8.5
(-1.8)
A 		3.5
(-3)
A 		20.4
(1.1)
A 		28.2
(3)
A 		16.9
(0.3)
A 		25
C 18.8
(0.2)
A 		24.3
(3)
A 		16.6
(-0.9)
A 		13.3
(-2.6)
A 		12.5
(-3)
A 		13.1
(-2.7)
A 		12
avr 15.9
(0.2) 		21.7
(3) 		9.3
(-3) 		18.4
(1.4) 		19.8
(2.1) 		11.3
(-2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185684_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18220
Sequence Type Exemplar sequence
Representative Public ID K02E10.5 NCBI
Target Description K02E10.5 /REP_DB=WormBase Gene ID /WP=CE04697 /TR=Q21132 /GB=AAC47071.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076049(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076049 NCBI Caenorhabditis elegans K02E10.5 (K02E10.5) mRNA, complete cds. 9/11 None
K02E10.5 ENSEMBL cdna:known chromosome:CEL140:X:2477100:2478758:-1 gene:K02E10.5 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2477097-2478758(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02E10.5
Entrez Gene 186890 Entrez gene
SwissProt Q21132 EMBL-EBI
WormBase CE35735 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47071 Hypothetical protein K02E10.5 [Caenorhabditis elegans] ref|NP_508450.2| K02E10.5 [Caenorhabditis elegans] 3.0E-52
blast CAE58871 Hypothetical protein CBG02102 [Caenorhabditis briggsae] 1.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508450.2 2 13-35,45-64
K02E10.5 2 13-35,45-64
Sequence
Target Sequence 
>C. ELEGANS:185684_AT
actcgtcttcatattttgcgtcagctcgtgttgcttcacatttggattatgtatagctat
ttatgacattaataattttggaagcggtctgtacctggcactggtgtcaattgtcacagt
tgtggttgttgtagcgttttgcctagttggaaccgaagatcaggtaaattttacaatagt
ggtgtatagaaatttttgttgtagacaatttgatttcagaatcttacacctgatttttca
tttgcattgtcgtattgcttgcgctgcgtcgtccattttatttcggaattcgaagcttag
cttctgtgttgatcatattgttttgttactgagcccacagtggcgaaaaaagtatggtca
acgacgcgccaaacaatgcgacgatttaaaaaggaaccgtcgtcgaggatgcctgccggt
atcgaaattcgaatcgtcaatattgacctggaagctgaaggagcaagaagttgttcttca
tcaagcgatcatcattcccctgctaatgattcatcggtatgaatttattatcttgatatc
tctagaaaaatatcggaaatcgtctaagaatttccctctgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCGTCTTCATATTTTGCGTCAGC 292 99 54 Antisense
AGCTCGTGTTGCTTCACATTTGGAT 145 81 76 Antisense
GTCTGTACCTGGCACTGGTGTCAAT 148 471 140 Antisense
GTAGCGTTTTGCCTAGTTGGAACCG 626 457 184 Antisense
TGCATTGTCGTATTGCTTGCGCTGC 454 579 296 Antisense
CTGCGTCGTCCATTTTATTTCGGAA 3 233 317 Antisense
GTATGGTCAACGACGCGCCAAACAA 214 455 405 Antisense
AAGGAACCGTCGTCGAGGATGCCTG 296 161 444 Antisense
ATGCCTGCCGGTATCGAAATTCGAA 120 39 462 Antisense
ATTCCCCTGCTAATGATTCATCGGT 341 9 547 Antisense
AATCGTCTAAGAATTTCCCTCTGCC 158 169 611 Antisense
Sequence Source Affymetrix Proprietary Database