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[185683_at]

Description Y67A10A.9 /REP_DB=WormBase Gene ID /WP=CE24570 /TR=Q9U1V0 /GB=CAB60450.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 04      4grp_high_8_8 > 49      6grp_highest_nonorm > 70      6grp_total > 14      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 316
1 2 3 4 range
A 344
(3)
P 		231.3
(0.8)
P 		220.8
(0.5)
P 		42.5
(-3)
A 		302
B 332.3
(3)
P 		272
(1.7)
P 		191
(-0)
P 		50.2
(-3)
A 		282
C 358.5
(3)
P 		229.8
(-0.3)
P 		259.3
(0.4)
P 		126.4
(-3)
P 		232
avr 344.9
(3) 		244.4
(0.8) 		223.7
(0.3) 		73
(-3) 		272

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 380
1 2 3 4 5 6 range
A 433.2
(3)
P 		387.6
(2.2)
P 		249.1
(-0.3)
P 		248.4
(-0.4)
P 		137.6
(-2.4)
P 		102.9
(-3)
P 		330
B 482.5
(3)
P 		347.5
(0.8)
P 		332.2
(0.5)
P 		224.8
(-1.2)
P 		168.4
(-2.1)
P 		115.8
(-3)
P 		367
C 447.3
(3)
P 		385
(1.9)
P 		236.4
(-0.8)
P 		211.3
(-1.3)
P 		139.4
(-2.6)
P 		114.9
(-3)
P 		332
avr 454.3
(3) 		373.4
(1.6) 		272.6
(-0.2) 		228.2
(-1) 		148.5
(-2.3) 		111.2
(-3) 		343
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 125.3
(3)
P 		50.2
(-0.8)
P 		57.7
(-0.4)
P 		6.2
(-3)
A 		119
B 106
(3)
P 		67.2
(0.6)
P 		44.3
(-0.9)
P 		10.7
(-3)
A 		95
C 118.7
(3)
P 		66.1
(-0.2)
P 		90.4
(1.3)
P 		21.3
(-3)
P 		97
avr 116.7
(3) 		61.2
(-0.2) 		64.1
(-0) 		12.7
(-3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 79.9
(-0.1)
P 		137.8
(3)
P 		54.2
(-1.5)
P 		63
(-1)
P 		41.5
(-2.1)
P 		25.1
(-3)
P 		113
B 167.9
(3)
P 		115.7
(0.5)
P 		80.7
(-1.2)
P 		59.5
(-2.2)
P 		68.4
(-1.8)
P 		43.2
(-3)
P 		125
C 165.8
(3)
P 		117.5
(0.7)
P 		60.2
(-2)
P 		42.5
(-2.8)
P 		45.1
(-2.7)
P 		38.5
(-3)
P 		127
avr 137.9
(3) 		123.7
(2.2) 		65
(-1.3) 		55
(-1.9) 		51.7
(-2.1) 		35.6
(-3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185683_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8803
Sequence Type Exemplar sequence
Representative Public ID Y67A10A.9 NCBI
Target Description Y67A10A.9 /REP_DB=WormBase Gene ID /WP=CE24570 /TR=Q9U1V0 /GB=CAB60450.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070345(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070345 NCBI Caenorhabditis elegans Y67A10A.9 (Y67A10A.9) mRNA, complete cds. 11/11 A 
SNAP00000008018 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14394632:14400116:1 11/11 None
GENEFINDER00000008019 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14394115:14400116:1 11/11 None
Y67A10A.9 ENSEMBL cdna:known chromosome:CEL140:IV:14394105:14400322:1 gene:Y67A10A.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14394120-14400122(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y67A10A.9
Entrez Gene 178380 Entrez gene
SwissProt Q9U1V0 EMBL-EBI
WormBase CE24570 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60450 Hypothetical protein Y67A10A.9 [Caenorhabditis elegans] ref|NP_502746.1| Y67A10A.9 [Caenorhabditis elegans] 0.0
blast CAE73992 Hypothetical protein CBG21625 [Caenorhabditis briggsae] 0.0
blast NP_500189 Y38F2AL.1 [Caenorhabditis elegans] gb|AAF59478.2| Hypothetical protein Y38F2AL.1 [Caenorhabditis elegans] 4.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR010761 EMBL-EBI Clc-like 1.0E-126
Pfam IPR010761 EMBL-EBI Clc-like 4.3E-92
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502746.1 4 15-37,130-152,167-189,210-232
Y67A10A.9 4 15-37,130-152,167-189,210-232
SNAP00000008018 2 53-75,82-104
GENEFINDER00000008019 4 15-37,130-152,167-189,210-232
Sequence
Target Sequence 
>C. ELEGANS:185683_AT
taaaactgcaatgttaccaccaccaccaccagttcttcctgtaaaaccgaaaaatattcg
agattttggaattgatttatcaaaggaaagtgttggatcttgtaaagttgaagagacggg
atcacgagccatgttaccacagggaaagaattcggaaatttcaaattatgcaatcaataa
tccttgctatgatgactccgacgacttcccaccacctccatctgaaattggtttgaatac
atttgcgacaaaacagaaatcaataacaaatctttcattccgtggattatccggtgctca
acacatattcgatcgaccagagagcacagtttccgtttcatcaagtgccagtaataataa
aaatgatgtgaataatcgaagaaatccattgactaatatttcacagcattcattggttaa
tcggaggctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAAACTGCAATGTTACCACCACCA 89 641 1620 Antisense
GAGACGGGATCACGAGCCATGTTAC 527 393 1732 Antisense
ATCCTTGCTATGATGACTCCGACGA 618 39 1799 Antisense
CACCACCTCCATCTGAAATTGGTTT 684 199 1829 Antisense
AAATCTTTCATTCCGTGGATTATCC 660 117 1887 Antisense
CCGTGGATTATCCGGTGCTCAACAC 215 265 1899 Antisense
GTGCTCAACACATATTCGATCGACC 95 481 1913 Antisense
TCGACCAGAGAGCACAGTTTCCGTT 96 603 1932 Antisense
TTTCCGTTTCATCAAGTGCCAGTAA 660 667 1949 Antisense
GACTAATATTTCACAGCATTCATTG 568 371 2010 Antisense
GCATTCATTGGTTAATCGGAGGCTG 472 305 2025 Antisense
Sequence Source Affymetrix Proprietary Database