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[185682_at]

Description T24A6.19 /REP_DB=WormBase Gene ID /WP=CE21199 /TR=Q9TXS7 /GB=AAD34663.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 26      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 9.8
(1.9)
A 		10.6
(3)
A 		9.3
(1.2)
A 		6.2
(-3)
A 		4
B 5.1
(-2.9)
A 		23.1
(3)
A 		4.8
(-3)
A 		9.1
(-1.6)
A 		18
C 5.3
(-3)
A 		14.9
(-1.6)
A 		8.8
(-2.5)
A 		46.3
(3)
A 		41
avr 6.7
(-3) 		16.2
(1.1) 		7.6
(-2.6) 		20.5
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 9.3
(-1.7)
A 		9
(-1.8)
A 		1.9
(-3)
A 		36.5
(3)
A 		7.1
(-2.1)
A 		4
(-2.6)
A 		35
B 3.5
(-3)
A 		9.2
(3)
A 		8.7
(2.5)
A 		5.6
(-0.8)
A 		5.8
(-0.6)
A 		7.5
(1.2)
A 		6
C 6.9
(2.7)
A 		2.9
(-2.4)
A 		7.1
(3)
A 		3.4
(-1.7)
A 		2.9
(-2.4)
A 		2.4
(-3)
A 		5
avr 6.6
(-1.9) 		7
(-1.6) 		5.9
(-2.3) 		15.2
(3) 		5.3
(-2.6) 		4.6
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 3.6
(3)
A 		2.3
(0.1)
A 		2.4
(0.3)
A 		0.9
(-3)
A 		3
B 1.6
(-2.3)
A 		5.7
(3)
A 		1.1
(-3)
A 		1.9
(-2)
A 		5
C 1.7
(-3)
A 		4.3
(-0.4)
A 		3.1
(-1.6)
A 		7.8
(3)
A 		6
avr 2.3
(-2.7) 		4.1
(3) 		2.2
(-3) 		3.5
(1.1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.7
(-2.1)
A 		3.2
(-1.1)
A 		0.4
(-3)
A 		9.3
(3)
A 		2.1
(-1.9)
A 		1
(-2.6)
A 		9
B 1.2
(-3)
A 		3.1
(3)
A 		2.1
(-0.2)
A 		1.5
(-2.1)
A 		2.4
(0.8)
A 		2.8
(2.1)
A 		2
C 2.6
(3)
A 		0.9
(-2.4)
A 		1.8
(0.5)
A 		0.7
(-3)
A 		0.9
(-2.4)
A 		0.8
(-2.7)
A 		2
avr 1.8
(-2) 		2.4
(-0.5) 		1.4
(-3) 		3.8
(3) 		1.8
(-2) 		1.5
(-2.8) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185682_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15826
Sequence Type Exemplar sequence
Representative Public ID T24A6.19 NCBI
Target Description T24A6.19 /REP_DB=WormBase Gene ID /WP=CE21199 /TR=Q9TXS7 /GB=AAD34663.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071598(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071598 NCBI Caenorhabditis elegans GRound-Like (grd related) family member (grl-31) (grl-31) mRNA, complete cds. 11/11 None
SNAP00000027432 ENSEMBL cdna:SNAP chromosome:CEL140:V:3557031:3557603:-1 11/11 None
GENEFINDER00000027442 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3557031:3557603:-1 11/11 None
T24A6.19 ENSEMBL cdna:known chromosome:CEL140:V:3557031:3557603:-1 gene:T24A6.19 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3557030-3557603(-) 86.41 100.0
Public Domain and Genome References
Gene Title
Gene Symbol grl-31
Ensembl T24A6.19
Entrez Gene 188836 Entrez gene
SwissProt Q9TXS7 EMBL-EBI
WormBase CE21199 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD34663 Ground-like (grd related) protein 31 [Caenorhabditis elegans] ref|NP_503999.1| GRound-Like (grd related) family member (grl-31) [Caenorhabditis elegans] 1.0E-48
blast AAF39799 Ground-like (grd related) protein 27 [Caenorhabditis elegans] ref|NP_504006.1| GRound-Like (grd related) family member (grl-27) [Caenorhabditis elegans] 8.0E-40
blast CAE58215 Hypothetical protein CBG01310 [Caenorhabditis briggsae] 2.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 2.1E-21
Sequence
Target Sequence 
>C. ELEGANS:185682_AT
tttcctttgcttctattactactgcatgtcctggacttttgaacatctttggtggagctg
gaggtggaggatgtggtggatgtgggggcggctgtggcggaggatgtggatgtgcaccac
cacctccaccatgttgtggaggtggatgcggaggatgcggaagaaagaagagatcccttc
ctgagaaaccaactttcgttgggattgccgattccggtgacgatgtgatgtgcaacactc
cagcgctgaagaagatcattttggagaatattcaaaccaccgcctcggactcttccaagg
ccatcaacacagttctggagagccgccaaattcaacgcttcgtagttgtgtgctctgaaa
agccctttgtcttcacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCTTTGCTTCTATTACTACTGC 638 667 38 Antisense
GTCCTGGACTTTTGAACATCTTTGG 10 477 65 Antisense
TGAACATCTTTGGTGGAGCTGGAGG 172 573 77 Antisense
AAGAGATCCCTTCCTGAGAAACCAA 6 155 205 Antisense
CTTTCGTTGGGATTGCCGATTCCGG 514 213 230 Antisense
GATTCCGGTGACGATGTGATGTGCA 638 433 247 Antisense
TGCAACACTCCAGCGCTGAAGAAGA 72 577 268 Antisense
CAAGGCCATCAACACAGTTCTGGAG 599 183 333 Antisense
TGGAGAGCCGCCAAATTCAACGCTT 208 547 353 Antisense
ACGCTTCGTAGTTGTGTGCTCTGAA 219 91 372 Antisense
TCTGAAAAGCCCTTTGTCTTCACCT 214 607 391 Antisense
Sequence Source Affymetrix Proprietary Database