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[185681_at]

Description Y50D7A.1 /REP_DB=WormBase Gene ID /WP=CE26138 /TR=Q9N3K6 /GB=AAF59653.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 30      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 16.2
(-0.4)
A 		12.6
(-3)
A 		13.8
(-2.1)
A 		20.9
(3)
A 		8
B 66.8
(3)
A 		66.3
(2.9)
A 		21.1
(-3)
A 		24.1
(-2.6)
A 		46
C 64.1
(1.6)
A 		14.7
(-3)
A 		32.8
(-1.3)
A 		79.8
(3)
A 		65
avr 49
(3) 		31.2
(-1) 		22.6
(-3) 		41.6
(1.3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 49.3
(3)
A 		35.8
(0.8)
A 		20.7
(-1.7)
A 		18.9
(-2)
A 		44.5
(2.2)
A 		12.5
(-3)
A 		37
B 87.2
(3)
A 		12.1
(-2.5)
A 		5.9
(-3)
A 		28
(-1.4)
A 		8.6
(-2.8)
A 		83
(2.7)
A 		81
C 5.9
(-3)
A 		5.6
(-3)
A 		18.5
(-2)
A 		10.8
(-2.6)
A 		15.2
(-2.2)
A 		79.7
(3)
A 		74
avr 47.5
(1.5) 		17.8
(-2.6) 		15
(-3) 		19.2
(-2.4) 		22.8
(-1.9) 		58.4
(3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 5.9
(3)
A 		2.7
(-3)
A 		3.6
(-1.3)
A 		3.1
(-2.3)
A 		3
B 21.3
(3)
A 		16.4
(1.2)
A 		4.9
(-3)
A 		5.1
(-2.9)
A 		16
C 21.2
(3)
A 		4.2
(-3)
A 		11.4
(-0.5)
A 		13.5
(0.3)
A 		17
avr 16.1
(3) 		7.8
(-2.2) 		6.6
(-3) 		7.2
(-2.6) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 9.1
(0.5)
A 		12.7
(2.6)
A 		4.5
(-2.1)
A 		4.8
(-2)
A 		13.4
(3)
A 		3
(-3)
A 		10
B 30.3
(2.9)
A 		4
(-2.5)
A 		1.4
(-3)
A 		7.4
(-1.8)
A 		3.5
(-2.6)
A 		31
(3)
A 		30
C 2.2
(-2.9)
A 		1.7
(-3)
A 		4.7
(-2.3)
A 		2.2
(-2.9)
A 		4.9
(-2.2)
A 		26.7
(3)
A 		25
avr 13.9
(0.7) 		6.1
(-2.1) 		3.5
(-3) 		4.8
(-2.5) 		7.3
(-1.6) 		20.2
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185681_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8125
Sequence Type Exemplar sequence
Representative Public ID Y50D7A.1 NCBI
Target Description Y50D7A.1 /REP_DB=WormBase Gene ID /WP=CE26138 /TR=Q9N3K6 /GB=AAF59653.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064783(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064783 NCBI Caenorhabditis elegans Y50D7A.1 (Y50D7A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000021204 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:311281:314112:1 10/11 None
Y50D7A.1 ENSEMBL cdna:known chromosome:CEL140:III:292648:314265:1 gene:Y50D7A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021191 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:292648-314112(+) 92.43 98.56
Public Domain and Genome References
Gene Title
Ensembl Y50D7A.1
Entrez Gene 175193 Entrez gene
SwissProt Q9N3K6 EMBL-EBI
WormBase CE26138 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59653 Hypothetical protein Y50D7A.1 [Caenorhabditis elegans] ref|NP_497184.1| Y50D7A.1 [Caenorhabditis elegans] 0.0
blast CAE69509 Hypothetical protein CBG15717 [Caenorhabditis briggsae] 2.0E-48
blast CAE69509 Hypothetical protein CBG15717 [Caenorhabditis briggsae] 1.0E-29
blast AAF59653 Hypothetical protein Y50D7A.1 [Caenorhabditis elegans] ref|NP_497184.1| Y50D7A.1 [Caenorhabditis elegans] 1.0E-25
blast T03862 hypothetical protein C49G7.9 - Caenorhabditis elegans 3.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.7E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497184.1 1 207-229
Y50D7A.1 1 207-229
Sequence
Target Sequence 
>C. ELEGANS:185681_AT
gatttttgtgattcctacagttgcttaaaaattttttttcgaatttccagaatttttaca
tttttttacaacccaaacgttttgggaaattcacggaaatttttaaaaaaagaaatcata
aaattcggaaaaaatgctttaaaaacgtctaatattcagattttttccaaaagtgctaaa
aaactaatttttttcccagaaaaacgccatcaactcctacaacaagttcgcatgcaaatt
cgcaacgttttcacattcatgttcgttccattccacgccggggccaaaatgatgagccga
aaatgccacgttttgatgacgtggatctgtgggagctccggtgcacaattcgggcgctgg
acaccacaagctgagcagtacccatctcctgtagatactgacggttatttcctcgtcgga
tcccatcatgacgtcatcatgcactcgggacgtgtccgctacccaggaacactcgaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTTTGTGATTCCTACAGTTGCT 287 429 1921 Antisense
ACTCCTACAACAAGTTCGCATGCAA 523 99 2133 Antisense
GCATGCAAATTCGCAACGTTTTCAC 532 301 2150 Antisense
GTTTTCACATTCATGTTCGTTCCAT 144 449 2167 Antisense
ATTCCACGCCGGGGCCAAAATGATG 647 5 2190 Antisense
GATGAGCCGAAAATGCCACGTTTTG 377 409 2211 Antisense
ATGACGTGGATCTGTGGGAGCTCCG 91 45 2236 Antisense
GGACACCACAAGCTGAGCAGTACCC 585 525 2279 Antisense
CGTCGGATCCCATCATGACGTCATC 339 245 2334 Antisense
TCATCATGCACTCGGGACGTGTCCG 231 621 2354 Antisense
TCCGCTACCCAGGAACACTCGAAAA 637 595 2375 Antisense
Sequence Source Affymetrix Proprietary Database