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[185677_at] 7TM chemoreceptor, srab family

Description C36C5.11 /REP_DB=WormBase Gene ID /WP=CE08600 /TR=O16404 /GB=AAB65933.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 10      6grp_cgc > 33      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 6.9
(-3)
A 		15.7
(-2.3)
A 		6.7
(-3)
A 		79
(3)
A 		72
B 10.3
(3)
A 		2.7
(-3)
A 		7.9
(1.1)
A 		8.3
(1.4)
A 		8
C 10
(-2.8)
A 		32.7
(-1.6)
A 		5.8
(-3)
A 		119.3
(3)
A 		114
avr 9.1
(-2.8) 		17
(-2) 		6.8
(-3) 		68.9
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 7.4
(0.9)
A 		3.3
(-2.2)
A 		10.1
(3)
A 		4.2
(-1.5)
A 		2.3
(-3)
A 		8.3
(1.6)
A 		8
B 38.5
(3)
A 		15
(-1.1)
A 		10
(-1.9)
A 		3.7
(-3)
A 		7.3
(-2.4)
A 		5.3
(-2.7)
A 		35
C 2.2
(-3)
A 		28.4
(3)
A 		8.7
(-1.5)
A 		9.1
(-1.4)
A 		3.9
(-2.6)
A 		5.9
(-2.2)
A 		26
avr 16
(3) 		15.6
(2.8) 		9.6
(-0.3) 		5.7
(-2.4) 		4.5
(-3) 		6.5
(-2) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 2.5
(-2.5)
A 		3.4
(-2)
A 		1.7
(-3)
A 		11.6
(3)
A 		10
B 3.3
(3)
A 		0.7
(-3)
A 		1.8
(-0.5)
A 		1.8
(-0.5)
A 		3
C 3.3
(-2.6)
A 		9.4
(-0.5)
A 		2
(-3)
A 		20.1
(3)
A 		18
avr 3
(-2.2) 		4.5
(-1.3) 		1.8
(-3) 		11.2
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.4
(-0.2)
A 		1.2
(-1)
A 		2.2
(3)
A 		1.1
(-1.4)
A 		0.7
(-3)
A 		2
(2.2)
A 		2
B 13.4
(3)
A 		5
(-1.1)
A 		2.4
(-2.3)
A 		1
(-3)
A 		3
(-2)
A 		2
(-2.5)
A 		12
C 0.8
(-3)
A 		8.7
(3)
A 		2.2
(-1.9)
A 		1.8
(-2.2)
A 		1.3
(-2.6)
A 		2
(-2.1)
A 		8
avr 5.2
(3) 		5
(2.7) 		2.3
(-1.5) 		1.3
(-3) 		1.7
(-2.4) 		2
(-1.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185677_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15745
Sequence Type Exemplar sequence
Representative Public ID C36C5.11 NCBI
Target Description C36C5.11 /REP_DB=WormBase Gene ID /WP=CE08600 /TR=O16404 /GB=AAB65933.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071466(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071466 NCBI Caenorhabditis elegans Serpentine Receptor, class AB (class A-like) family member (srab-7) (srab-7) mRNA, complete cds. 11/11 None
SNAP00000036656 ENSEMBL cdna:SNAP chromosome:CEL140:V:3153312:3154999:-1 11/11 None
C36C5.11 ENSEMBL cdna:known chromosome:CEL140:V:3153312:3154999:-1 gene:C36C5.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036673 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3153311-3154999(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srab family
Gene Symbol srab-7
Ensembl C36C5.11
Entrez Gene 183267 Entrez gene
SwissProt O16404 EMBL-EBI
WormBase CE08600 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503867 Serpentine Receptor, class AB (class A-like) family member (srab-7) [Caenorhabditis elegans] gb|AAB65933.1| Serpentine receptor, class ab (class a-like) protein 7 [Caenorhabditis elegans] 0.0
blast NP_503862 Serpentine Receptor, class AB (class A-like) family member (srab-9) [Caenorhabditis elegans] gb|AAN73876.2| Serpentine receptor, class ab (class a-like) protein 9 [Caenorhabditis elegans] pir||E88989 protein C36C5.6 [imported] - Caenorhabditis elegans 1.0E-124
blast NP_503866 Serpentine Receptor, class AB (class A-like) family member (srab-6) [Caenorhabditis elegans] gb|AAB65932.1| Serpentine receptor, class ab (class a-like) protein 6 [Caenorhabditis elegans] 1.0E-119
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503867.1 7 24-46,53-70,103-125,144-166,190-212,243-262,277-296
C36C5.11 7 24-46,53-70,103-125,144-166,190-212,243-262,277-296
SNAP00000036656 7 24-46,53-70,103-125,144-166,190-212,243-262,277-296
Sequence
Target Sequence 
>C. ELEGANS:185677_AT
ctgggtgtgcgttggggatttatatggctattaagcagttttcaattgcaactatgacaa
cttattatgcattcttaatatttccattcaaggaaccttttatgccctactgcacagcta
tcaagcagggatttgttactaacgtcgaagtgattttccatattatcctccttgctcaaa
tagttggaagagttatttttcagtacttgtttaacttgaatgagaggctccgggcaaaac
aaatcacatgttcattgtcaaatcgatattctttggagcaaaacctaaagtctatgagaa
cattgaaactatttgcaaatttacaaactggatttcaagttatccatattatgttttttc
tattcttattgaaatttggcgcagaacttgaatcttctacttacttggctctacttgaat
ggagtggctcctaccccttatatgccattatttcaattgtggcattgttgaagaaggctc
aagtaaacaaagttcggctgaaaaaggagctggaagtccatatgagtgcagaccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGGTGTGCGTTGGGGATTTATAT 124 241 431 Antisense
CAAGGAACCTTTTATGCCCTACTGC 518 181 519 Antisense
TGCCCTACTGCACAGCTATCAAGCA 524 583 533 Antisense
CATATTATCCTCCTTGCTCAAATAG 300 215 589 Antisense
AGGCTCCGGGCAAAACAAATCACAT 392 53 655 Antisense
AATTTGGCGCAGAACTTGAATCTTC 6 175 803 Antisense
CTTGAATCTTCTACTTACTTGGCTC 550 217 817 Antisense
TCTACTTACTTGGCTCTACTTGAAT 174 615 826 Antisense
CTTGAATGGAGTGGCTCCTACCCCT 138 219 844 Antisense
CCTACCCCTTATATGCCATTATTTC 366 265 860 Antisense
GGAAGTCCATATGAGTGCAGACCAG 28 533 942 Antisense
Sequence Source Affymetrix Proprietary Database