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[185676_at]

Description Y59E1B.2 /REP_DB=WormBase Gene ID /WP=CE24511 /TR=Q9N332 /GB=AAF60818.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.1
(-3)
A 		4.4
(3)
A 		2.7
(-0.1)
A 		2.2
(-1)
A 		3
B 1.4
(-3)
A 		3.5
(2)
A 		1.5
(-2.8)
A 		3.9
(3)
A 		3
C 2.4
(-3)
A 		2.7
(-2.5)
A 		3.2
(-1.5)
A 		5.7
(3)
A 		3
avr 1.6
(-3) 		3.5
(2) 		2.5
(-0.7) 		3.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 3.7
(0.2)
A 		3.7
(0.2)
A 		5.2
(2)
A 		3.2
(-0.4)
A 		6
(3)
A 		1
(-3)
A 		5
B 0.4
(-3)
A 		13.4
(3)
A 		3.1
(-1.8)
A 		3.2
(-1.7)
A 		3.1
(-1.8)
A 		6.4
(-0.2)
A 		13
C 1.2
(-3)
A 		3.8
(-2.6)
A 		2.6
(-2.8)
A 		39.6
(3)
A 		1.6
(-2.9)
A 		9.9
(-1.6)
A 		38
avr 1.8
(-3) 		7
(-0.7) 		3.6
(-2.2) 		15.3
(3) 		3.6
(-2.2) 		5.8
(-1.2) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.4
(-2.1)
A 		1
(3)
A 		0.7
(0.4)
A 		0.3
(-3)
A 		1
B 0.4
(-2)
A 		0.9
(3)
A 		0.3
(-3)
A 		0.8
(2)
A 		1
C 0.8
(-3)
A 		0.8
(-3)
A 		1.1
(3)
A 		1
(1)
A 		0
avr 0.5
(-3) 		0.9
(3) 		0.7
(-0) 		0.7
(-0) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.7
(-1.4)
A 		1.3
(1)
A 		1.1
(0.2)
A 		0.8
(-1)
A 		1.8
(3)
A 		0.3
(-3)
A 		2
B 0.2
(-3)
A 		4.5
(3)
A 		0.7
(-2.3)
A 		0.9
(-2)
A 		1.3
(-1.5)
A 		2.4
(0.1)
A 		4
C 0.5
(-3)
A 		1.2
(-2.4)
A 		0.7
(-2.8)
A 		8
(3)
A 		0.5
(-3)
A 		3.3
(-0.8)
A 		8
avr 0.5
(-3) 		2.3
(1) 		0.8
(-2.3) 		3.2
(3) 		1.2
(-1.4) 		2
(0.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185676_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18264
Sequence Type Exemplar sequence
Representative Public ID Y59E1B.2 NCBI
Target Description Y59E1B.2 /REP_DB=WormBase Gene ID /WP=CE24511 /TR=Q9N332 /GB=AAF60818.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075943(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075943 NCBI Caenorhabditis elegans Y59E1B.2 (Y59E1B.2) mRNA, complete cds. 11/11 None
Y59E1B.2 ENSEMBL cdna:known chromosome:CEL140:X:1873263:1873773:1 gene:Y59E1B.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002667 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1873262-1873773(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y59E1B.2
Entrez Gene 190412 Entrez gene
SwissProt Q9N332 EMBL-EBI
WormBase CE24511 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60818 Hypothetical protein Y59E1B.2 [Caenorhabditis elegans] ref|NP_508344.1| Y59E1B.2 [Caenorhabditis elegans] 1.0E-53
Sequence
Target Sequence 
>C. ELEGANS:185676_AT
tggaaaacttcaacagtgcaccttgatagaaaattttgtggagaagtacgatcagattct
gccagacaagattgcacattttgtgaaaaaaatgggaagcttcaagttgtatcttgtgtt
caatatcaaaaggcaggatttagaaatttagaaaaacacggcttcaattacatgaaaaaa
gtggtcccgttacacattttggatgcaagtactgtccagaaaacacaacaacttatgctt
tttgcttgccatggatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAAAACTTCAACAGTGCACCTTG 33 547 25 Antisense
AACAGTGCACCTTGATAGAAAATTT 427 137 36 Antisense
GGAGAAGTACGATCAGATTCTGCCA 385 519 64 Antisense
GATTCTGCCAGACAAGATTGCACAT 167 433 79 Antisense
AATGGGAAGCTTCAAGTTGTATCTT 487 161 115 Antisense
GTTGTATCTTGTGTTCAATATCAAA 449 437 130 Antisense
GAAAAACACGGCTTCAATTACATGA 154 355 175 Antisense
AGTGGTCCCGTTACACATTTTGGAT 601 47 204 Antisense
GATGCAAGTACTGTCCAGAAAACAC 372 411 226 Antisense
AACACAACAACTTATGCTTTTTGCT 141 133 246 Antisense
TATGCTTTTTGCTTGCCATGGATCA 285 657 258 Antisense
Sequence Source Affymetrix Proprietary Database