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[185674_at]

Description C12D5.10 /REP_DB=WormBase Gene ID /WP=CE06812 /TR=Q17932 /GB=AAA98576.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 29      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 87.6
(-1.3)
A 		93.4
(-0.8)
A 		68.7
(-3)
A 		137.3
(3)
M 		69
B 78.3
(3)
P 		61.5
(0.8)
A 		32
(-3)
A 		57.1
(0.3)
A 		46
C 99.9
(3)
P 		79.6
(0.8)
A 		44.1
(-3)
A 		93.7
(2.3)
P 		56
avr 88.6
(2.1) 		78.2
(0.8) 		48.3
(-3) 		96
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 42.4
(-2.1)
A 		42.9
(-2.1)
A 		127
(3)
P 		52.4
(-1.5)
A 		52.7
(-1.5)
A 		27.5
(-3)
A 		100
B 58.3
(0.6)
A 		62.6
(1.4)
P 		58.4
(0.7)
P 		37.1
(-3)
A 		72
(3)
A 		40.4
(-2.4)
A 		35
C 35
(-2.2)
A 		99.3
(1.5)
P 		44.4
(-1.7)
A 		124.5
(3)
A 		21.6
(-3)
A 		45.7
(-1.6)
A 		103
avr 45.2
(-1.9) 		68.3
(1.7) 		76.6
(3) 		71.3
(2.2) 		48.8
(-1.3) 		37.9
(-3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 31.9
(3)
A 		20.3
(-2)
A 		18
(-3)
A 		20.1
(-2.1)
M 		14
B 25
(3)
P 		15.2
(-0.3)
A 		7.4
(-3)
A 		12.2
(-1.4)
A 		18
C 33.1
(3)
P 		22.9
(-0.5)
A 		15.4
(-3)
A 		15.8
(-2.9)
P 		18
avr 30
(3) 		19.5
(-0.8) 		13.6
(-3) 		16
(-2.1) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 7.8
(-2.7)
A 		15.2
(-0.6)
A 		27.7
(3)
P 		13.3
(-1.1)
A 		15.9
(-0.4)
A 		6.7
(-3)
A 		21
B 20.3
(0.2)
A 		20.8
(0.4)
P 		14.2
(-1.6)
P 		9.8
(-3)
A 		29.3
(3)
A 		15.1
(-1.4)
A 		20
C 13
(-1.5)
A 		30.3
(3)
P 		11.3
(-1.9)
A 		25
(1.6)
A 		7
(-3)
A 		15.3
(-0.9)
A 		23
avr 13.7
(-2.2) 		22.1
(3) 		17.7
(0.3) 		16
(-0.8) 		17.4
(0.1) 		12.4
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185674_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12403
Sequence Type Exemplar sequence
Representative Public ID C12D5.10 NCBI
Target Description C12D5.10 /REP_DB=WormBase Gene ID /WP=CE06812 /TR=Q17932 /GB=AAA98576.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072591(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072591 NCBI Caenorhabditis elegans C12D5.10 (C12D5.10) mRNA, complete cds. 11/11 None
SNAP00000021447 ENSEMBL cdna:SNAP chromosome:CEL140:V:7694683:7696080:-1 11/11 None
GENEFINDER00000021450 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7694683:7696025:-1 11/11 None
C12D5.10 ENSEMBL cdna:known chromosome:CEL140:V:7694683:7696080:-1 gene:C12D5.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7694683-7696081(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C12D5.10
Entrez Gene 182539 Entrez gene
SwissProt Q17932 EMBL-EBI
WormBase CE35229 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA98576 Hypothetical protein C12D5.10 [Caenorhabditis elegans] ref|NP_504992.2| C12D5.10 [Caenorhabditis elegans] 0.0
blast CAE70442 Hypothetical protein CBG17019 [Caenorhabditis briggsae] 1.0E-70
blast CAE70442 Hypothetical protein CBG17019 [Caenorhabditis briggsae] 9.0E-69
blast CAE70442 Hypothetical protein CBG17019 [Caenorhabditis briggsae] 1.0E-68
blast AAA98574 Hypothetical protein C12D5.9 [Caenorhabditis elegans] ref|NP_504991.1| C12D5.9 [Caenorhabditis elegans] 9.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 1.1E-58
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 1.1E-58
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 1.1E-58
Sequence
Target Sequence 
>C. ELEGANS:185674_AT
cagttatgtatttctcttctcaatatgaacactttgtggatctaatctcaattaaacctg
atggagaaccttgtgttggtctgtactatgagctaaacgagcttcgctgcaatgagccag
tttctcaattttctttacaatttgttactctttttgcaaaacttatgccaccaatggtga
tgaatcaatccgaaagcgacgaagcaaatgaatttacgaatttgctgaagcatgatgatt
cagacacctcaaagatttgcatgtatgtacaggactgtctggtagattcctgtacattct
ccaaaaagaaagggatcagcgaatatttagacgtagtctgtggcgagttggaaaaaatgg
acaatataaatgaaaaatttgtcgattgcctcgacttttttcgagacgataattcaactt
taagcaactgtgtgaaaaattacgaaacatcgaaaactgtggaaaatgctccagtcgtat
tgaaaaactgcattaaaaatggaatcgaggctaaatgtggagctgctgcactggagaatt
tcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTTATGTATTTCTCTTCTCAATA 341 207 488 Antisense
GAACACTTTGTGGATCTAATCTCAA 466 351 514 Antisense
GGAGAACCTTGTGTTGGTCTGTACT 678 517 550 Antisense
ACGAGCTTCGCTGCAATGAGCCAGT 552 93 584 Antisense
GATTCAGACACCTCAAAGATTTGCA 290 431 724 Antisense
GGACTGTCTGGTAGATTCCTGTACA 58 525 759 Antisense
GATTCCTGTACATTCTCCAAAAAGA 416 433 772 Antisense
GACGTAGTCTGTGGCGAGTTGGAAA 73 379 817 Antisense
GTCGATTGCCTCGACTTTTTTCGAG 245 473 868 Antisense
GGAAAATGCTCCAGTCGTATTGAAA 289 529 948 Antisense
GGAGCTGCTGCACTGGAGAATTTCG 593 521 1006 Antisense
Sequence Source Affymetrix Proprietary Database