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[185672_at]

Description T05B4.10 /REP_DB=WormBase Gene ID /WP=CE13211 /TR=O16419 /GB=AAC69053.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 57      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 110.8
(-1.7)
M 		86.1
(-3)
A 		198.4
(3)
A 		129.2
(-0.7)
P 		112
B 100.2
(-2.6)
P 		180.1
(3)
A 		159.2
(1.5)
A 		93.9
(-3)
A 		86
C 132.1
(-0.5)
P 		174.5
(3)
A 		118
(-1.7)
A 		102.1
(-3)
A 		72
avr 114.4
(-2.3) 		146.9
(1.6) 		158.5
(3) 		108.4
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 139.9
(3)
A 		100.8
(0.9)
A 		56.9
(-1.5)
A 		72.6
(-0.7)
A 		30.5
(-3)
A 		30
(-3)
A 		110
B 168
(3)
P 		55.1
(-1.9)
A 		46.6
(-2.3)
A 		66
(-1.4)
A 		58.2
(-1.8)
A 		29.8
(-3)
A 		138
C 203
(3)
P 		92.6
(-0.5)
A 		50.8
(-1.9)
A 		15.1
(-3)
A 		58.1
(-1.6)
A 		44
(-2.1)
A 		188
avr 170.3
(3) 		82.8
(-0.9) 		51.4
(-2.3) 		51.2
(-2.3) 		48.9
(-2.4) 		34.6
(-3) 		136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 40.3
(0.9)
M 		18.7
(-3)
A 		51.9
(3)
A 		18.9
(-3)
P 		33
B 31.9
(-0.1)
P 		44.5
(3)
A 		36.9
(1.1)
A 		20
(-3)
A 		25
C 43.7
(1.8)
P 		50.2
(3)
A 		41.1
(1.3)
A 		17.2
(-3)
A 		33
avr 38.6
(1.9) 		37.8
(1.7) 		43.3
(3) 		18.7
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 25.8
(0.9)
A 		35.8
(3)
A 		12.4
(-1.9)
A 		18.4
(-0.7)
A 		9.2
(-2.6)
A 		7.3
(-3)
A 		29
B 58.5
(3)
P 		18.4
(-2.1)
A 		11.3
(-3)
A 		17.5
(-2.2)
A 		23.6
(-1.4)
A 		11.1
(-3)
A 		47
C 75.2
(3)
P 		28.3
(-0.9)
A 		12.9
(-2.2)
A 		3
(-3)
A 		18.8
(-1.7)
A 		14.7
(-2)
A 		72
avr 53.2
(3) 		27.5
(-0.7) 		12.2
(-2.8) 		13
(-2.7) 		17.2
(-2.1) 		11
(-3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185672_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15184
Sequence Type Exemplar sequence
Representative Public ID T05B4.10 NCBI
Target Description T05B4.10 /REP_DB=WormBase Gene ID /WP=CE13211 /TR=O16419 /GB=AAC69053.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071746(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071746 NCBI Caenorhabditis elegans T05B4.10 (T05B4.10) mRNA, complete cds. 11/11 None
SNAP00000031063 ENSEMBL cdna:SNAP chromosome:CEL140:V:4119703:4120703:-1 11/11 None
GENEFINDER00000031079 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4119703:4120542:-1 11/11 None
T05B4.10 ENSEMBL cdna:known chromosome:CEL140:V:4119703:4120542:-1 gene:T05B4.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4119702-4120542(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05B4.10
Entrez Gene 188106 Entrez gene
SwissProt O16419 EMBL-EBI
WormBase CE13211 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69053 Hypothetical protein T05B4.10 [Caenorhabditis elegans] ref|NP_504147.1| T05B4.10 [Caenorhabditis elegans] 1.0E-139
blast AAC69059 Hypothetical protein T05B4.9 [Caenorhabditis elegans] ref|NP_504146.1| T05B4.9 [Caenorhabditis elegans] 1.0E-132
blast AAC69058 Hypothetical protein T05B4.8 [Caenorhabditis elegans] ref|NP_504145.1| T05B4.8 [Caenorhabditis elegans] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 8.4E-12
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.5E-14
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.0E-13
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 8.4E-12
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.5E-14
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.0E-13
Sequence
Target Sequence 
>C. ELEGANS:185672_AT
gtggcttgttcaaaccttatttccgacgcatcgtgcgctgttctctatccaacaactgat
acactgggatacccagctcctggaaatgctgctggaagaccactggcttgctacaccact
ggttcagttactccagctgcagtgattcaagacatgaagactgccgctgcttccacgtgc
ccaagaacgtgtggattgtgttgtcaaactgatgcctacagctgccctaacgttgcttat
cctcgtcttaactgcgcttctatcactctttctcaatgcaactccccagcctggagaacg
atcattgccgctgactgcccatctgcttgcggattctgcaaccaaggcggatgcgtcgat
gccgtcactaactgcggaaacgacctcagcatttgtaacaccgttggaatgcagacattc
gtaaacacctattgccagagaacctgcggaagatgcccatcaaccaccgcatccggaagt
gtgactgtaacatcgggaacttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCTTGTTCAAACCTTATTTCCG 626 489 136 Antisense
CGCTGTTCTCTATCCAACAACTGAT 640 255 171 Antisense
TACACTGGGATACCCAGCTCCTGGA 147 643 195 Antisense
GCTTCCACGTGCCCAAGAACGTGTG 643 303 304 Antisense
GTCAAACTGATGCCTACAGCTGCCC 180 465 338 Antisense
CACTAACTGCGGAAACGACCTCAGC 666 57 501 Antisense
CGACCTCAGCATTTGTAACACCGTT 82 251 516 Antisense
GACATTCGTAAACACCTATTGCCAG 569 363 549 Antisense
CACCTATTGCCAGAGAACCTGCGGA 563 201 561 Antisense
ATCAACCACCGCATCCGGAAGTGTG 57 25 594 Antisense
GTGACTGTAACATCGGGAACTTGCA 492 481 616 Antisense
Sequence Source Affymetrix Proprietary Database