[Home] | [Total List]

[185671_s_at]

Description Y53F4B.26 /REP_DB=WormBase Gene ID /WP=CE25406 /TR=Q9N671 /GB=CAB70113.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 05      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 222
1 2 3 4 range
A 55
(1.3)
A 		9.9
(-3)
A 		32.6
(-0.8)
A 		72.4
(3)
M 		63
B 44.3
(3)
A 		3.6
(-2.9)
A 		2.6
(-3)
A 		32.2
(1.3)
A 		42
C 57.1
(-1.6)
P 		10.8
(-2.9)
A 		5.7
(-3)
A 		224.1
(3)
P 		218
avr 52.1
(-0.4) 		8.1
(-3) 		13.6
(-2.7) 		109.6
(3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 28.1
(2.7)
A 		8.9
(-2.2)
A 		7.6
(-2.5)
A 		27.1
(2.5)
A 		29.2
(3)
A 		5.7
(-3)
A 		24
B 9.7
(-2.7)
A 		10.8
(-2.6)
A 		26.2
(-0.5)
A 		7.7
(-3)
A 		9.5
(-2.8)
A 		51.9
(3)
P 		44
C 4.7
(-2.7)
A 		4.6
(-2.7)
A 		33.1
(0.4)
A 		2.8
(-2.9)
A 		2.2
(-3)
A 		57.4
(3)
P 		55
avr 14.2
(-1.8) 		8.1
(-3) 		22.3
(-0.2) 		12.5
(-2.1) 		13.6
(-1.9) 		38.3
(3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 20
(3)
A 		2.1
(-3)
A 		8.5
(-0.9)
A 		10.6
(-0.2)
M 		18
B 14.1
(3)
A 		0.9
(-2.9)
A 		0.6
(-3)
A 		6.9
(-0.2)
A 		14
C 18.9
(-0.2)
P 		3.1
(-2.8)
A 		2
(-3)
A 		37.8
(3)
P 		36
avr 17.7
(2.7) 		2
(-3) 		3.7
(-2.4) 		18.4
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 5.2
(0.1)
A 		3.2
(-1.5)
A 		1.6
(-2.8)
A 		6.9
(1.5)
A 		8.8
(3)
A 		1.4
(-3)
A 		7
B 3.4
(-2.5)
A 		3.6
(-2.4)
A 		6.4
(-1.5)
A 		2
(-3)
A 		3.8
(-2.4)
A 		19.4
(3)
P 		17
C 1.8
(-2.6)
A 		1.4
(-2.7)
A 		8.4
(-0.5)
A 		0.6
(-3)
A 		0.7
(-3)
A 		19.2
(3)
P 		19
avr 3.5
(-2.5) 		2.7
(-3) 		5.5
(-1.4) 		3.2
(-2.7) 		4.4
(-2) 		13.3
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185671_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3789
Sequence Type Exemplar sequence
Representative Public ID Y53F4B.26 NCBI
Target Description Y53F4B.26 /REP_DB=WormBase Gene ID /WP=CE25406 /TR=Q9N671 /GB=CAB70113.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061748(11), NM_064691(11), NM_064711(11), NM_061742(11), NM_061740(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061748 NCBI Caenorhabditis elegans F59H6.5 (F59H6.5) mRNA, complete cds. 11/11 A 
NM_064691 NCBI Caenorhabditis elegans Y53F4B.7 (Y53F4B.7) mRNA, complete cds. 11/11 None
NM_064711 NCBI Caenorhabditis elegans Y53F4B.26 (Y53F4B.26) mRNA, complete cds. 11/11 None
NM_061742 NCBI Caenorhabditis elegans Y16E11A.2 (Y16E11A.2) mRNA, complete cds. 11/11 A 
NM_061740 NCBI Caenorhabditis elegans ZK250.9 (ZK250.9) mRNA, complete cds. 11/11 A 
SNAP00000001660 ENSEMBL cdna:SNAP chromosome:CEL140:II:2594053:2598926:-1 10/11 None
GENEFINDER00000001667 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2594053:2598926:-1 10/11 None
SNAP00000002418 ENSEMBL cdna:SNAP chromosome:CEL140:II:2003378:2008251:1 11/11 None
GENEFINDER00000002441 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2003378:2008251:1 11/11 None
SNAP00000013033 ENSEMBL cdna:SNAP chromosome:CEL140:II:1963064:1967937:-1 11/11 None
GENEFINDER00000013045 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1963064:1967937:-1 11/11 None
SNAP00000020797 ENSEMBL cdna:SNAP chromosome:CEL140:II:1974554:1975708:-1 11/11 None
SNAP00000020798 ENSEMBL cdna:SNAP chromosome:CEL140:II:1979246:1984119:-1 11/11 None
GENEFINDER00000020804 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1974734:1975708:-1 11/11 None
GENEFINDER00000020805 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1979246:1984119:-1 11/11 None
SNAP00000043044 ENSEMBL cdna:SNAP chromosome:CEL140:II:14992788:14997334:1 11/11 None
SNAP00000043063 ENSEMBL cdna:SNAP chromosome:CEL140:II:15137975:15140871:-1 11/11 None
GENEFINDER00000043146 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:15139368:15140871:-1 11/11 None
GENEFINDER00000043152 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14992788:14994107:1 11/11 None
ZK250.9 ENSEMBL cdna:known chromosome:CEL140:II:1963064:1967937:-1 gene:ZK250.9 11/11 A 
Y16E11A.2 ENSEMBL cdna:known chromosome:CEL140:II:1979246:1984119:-1 gene:Y16E11A.2 11/11 A 
F59H6.5 ENSEMBL cdna:known chromosome:CEL140:II:2003378:2008251:1 gene:F59H6.5 11/11 A 
Y53F4B.7 ENSEMBL cdna:known chromosome:CEL140:II:14992788:14993293:1 gene:Y53F4B.7 11/11 None
Y53F4B.26 ENSEMBL cdna:known chromosome:CEL140:II:15140366:15140871:-1 gene:Y53F4B.26 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061901 8/11 Cross Hyb Matching Probes None
F33H12.6 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title




Ensembl ZK250.9
Y16E11A.2
F59H6.5
Y53F4B.7
Y53F4B.26
Entrez Gene 186644 Entrez gene
189441 Entrez gene
190210 Entrez gene
190222 Entrez gene
191264 Entrez gene
SwissProt Q9N5Q7 EMBL-EBI
O17306 EMBL-EBI
Q9N671 EMBL-EBI
WormBase CE20911 Wormbase
CE15283 Wormbase
CE25406 Wormbase
CE25406 Wormbase
CE15283 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39854 Hypothetical protein F59H6.5 [Caenorhabditis elegans] ref|NP_494149.1| F59H6.5 [Caenorhabditis elegans] 0.0
blast AAF60434 Hypothetical protein Y16E11A.2 [Caenorhabditis elegans] gb|AAB71069.1| Hypothetical protein ZK250.9 [Caenorhabditis elegans] ref|NP_494141.1| ZK250.9 [Caenorhabditis elegans] ref|NP_494143.1| Y16E11A.2 [Caenorhabditis elegans] 0.0
blast AAB95006 Hypothetical protein F33H12.6 [Caenorhabditis elegans] ref|NP_494302.1| F33H12.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.5.MarR-like transcriptional regulators All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; MarR-like transcriptional regulators 2.29999995231628
scop a.4.5.MarR-like transcriptional regulators All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; MarR-like transcriptional regulators 2.79999995231628
Pfam IPR009497 EMBL-EBI Protein of unknown function DUF1114 7.3E-60
Pfam IPR009497 EMBL-EBI Protein of unknown function DUF1114 7.9E-20
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 0.64
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 2.1E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.5E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.9E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.5E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.5E-9
Pfam IPR010285 EMBL-EBI Eukaryotic protein of unknown function DUF889 1.0E-126
Pfam IPR010285 EMBL-EBI Eukaryotic protein of unknown function DUF889 1.0E-126
Pfam IPR010285 EMBL-EBI Eukaryotic protein of unknown function DUF889 1.0E-126
Pfam IPR010285 EMBL-EBI Eukaryotic protein of unknown function DUF889 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:185671_S_AT
acgagctaacaagtcgacccgattcaataatggatacggaaccaacaactctacccgatt
cagcaatggataccaaaccaacaaacctgcctgatttcccttctacatcccaagaacccg
tctctaggaggacacgttccagaacattaagtgacaactcaaatgctgtatggaagagag
aacgtcgttcaagagaaacttcgcaagaatcagaatcaagactcaggatggattgggaaa
gaaaaaaggaaaaacgagcttcaatgtcagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGAGCTAACAAGTCGACCCGATTC 203 91 20 Antisense
TCGACCCGATTCAATAATGGATACG 421 599 33 Antisense
GATACGGAACCAACAACTCTACCCG 379 423 52 Antisense
AACTCTACCCGATTCAGCAATGGAT 439 141 66 Antisense
CAAACCAACAAACCTGCCTGATTTC 708 191 93 Antisense
TCCCAAGAACCCGTCTCTAGGAGGA 388 599 127 Antisense
GTCTCTAGGAGGACACGTTCCAGAA 710 459 139 Antisense
GTGACAACTCAAATGCTGTATGGAA 705 481 170 Antisense
GAACGTCGTTCAAGAGAAACTTCGC 434 345 199 Antisense
GCAAGAATCAGAATCAAGACTCAGG 172 317 222 Antisense
GGAAAAACGAGCTTCAATGTCAGAA 366 527 267 Antisense
Sequence Source Affymetrix Proprietary Database