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[185670_at]

Description R03H10.1 /REP_DB=WormBase Gene ID /WP=CE02837 /TR=Q9GYL7 /GB=AAF99998.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 11      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 106.1
(-0.2)
A 		86
(-1.4)
A 		60
(-3)
A 		157.8
(3)
A 		98
B 42.7
(-2.6)
A 		78.6
(-0.5)
A 		36.5
(-3)
A 		139.2
(3)
P 		103
C 84.8
(-1.3)
A 		55.8
(-3)
A 		86.8
(-1.1)
A 		156.2
(3)
M 		100
avr 77.9
(-1.9) 		73.5
(-2.2) 		61.1
(-3) 		151.1
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 310
1 2 3 4 5 6 range
A 61.6
(-3)
A 		85.6
(-2.1)
A 		153.1
(0.5)
A 		168.9
(1.1)
A 		169.3
(1.1)
M 		217.8
(3)
P 		156
B 122.7
(-2.3)
A 		98.8
(-3)
A 		103
(-2.9)
A 		180.1
(-0.8)
A 		230.3
(0.6)
P 		317.1
(3)
P 		218
C 103.9
(-2.4)
A 		75.6
(-3)
A 		136.6
(-1.8)
A 		163.6
(-1.2)
A 		213.5
(-0.2)
P 		371.6
(3)
P 		296
avr 96.1
(-2.7) 		86.7
(-3) 		130.9
(-1.8) 		170.9
(-0.7) 		204.4
(0.3) 		302.2
(3) 		216
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 38.6
(3)
A 		18.7
(-2.2)
A 		15.7
(-3)
A 		23.1
(-1.1)
A 		23
B 13.6
(-1.6)
A 		19.4
(0.1)
A 		8.5
(-3)
A 		29.7
(3)
P 		21
C 28.1
(2.1)
A 		16
(-3)
A 		30.2
(3)
A 		26.3
(1.4)
M 		14
avr 26.8
(3) 		18
(-3) 		18.1
(-2.9) 		26.4
(2.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 11.4
(-3)
A 		30.4
(-0.3)
A 		33.3
(0.2)
A 		42.8
(1.5)
A 		51.1
(2.7)
M 		53
(3)
P 		42
B 42.7
(-1.9)
A 		32.9
(-2.5)
A 		25
(-3)
A 		47.7
(-1.5)
A 		93.6
(1.4)
P 		118.3
(3)
P 		93
C 38.5
(-2.1)
A 		23.1
(-3)
A 		34.8
(-2.3)
A 		32.9
(-2.4)
A 		69.1
(-0.3)
P 		124.4
(3)
P 		101
avr 30.9
(-2.8) 		28.8
(-3) 		31
(-2.8) 		41.1
(-1.9) 		71.3
(0.7) 		98.6
(3) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185670_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4204
Sequence Type Exemplar sequence
Representative Public ID R03H10.1 NCBI
Target Description R03H10.1 /REP_DB=WormBase Gene ID /WP=CE02837 /TR=Q9GYL7 /GB=AAF99998.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062334(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062334 NCBI Caenorhabditis elegans R03H10.1 (R03H10.1) mRNA, complete cds. 11/11 None
R03H10.1 ENSEMBL cdna:known chromosome:CEL140:II:4180281:4183483:1 gene:R03H10.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041946 5/11 Cross Hyb Matching Probes None
SNAP00000041947 5/11 Cross Hyb Matching Probes None
GENEFINDER00000041953 5/11 Cross Hyb Matching Probes None
GENEFINDER00000041955 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4180279-4183482(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R03H10.1
Entrez Gene 187555 Entrez gene
SwissProt Q9GYL7 EMBL-EBI
WormBase CE02837 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99998 Hypothetical protein R03H10.1 [Caenorhabditis elegans] ref|NP_494735.1| R03H10.1 [Caenorhabditis elegans] 0.0
blast AAB52344 Hypothetical protein F48C1.2 [Caenorhabditis elegans] ref|NP_491567.2| F48C1.2 [Caenorhabditis elegans] 2.0E-15
blast CAE74277 Hypothetical protein CBG21972 [Caenorhabditis briggsae] 3.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.9E-4
Sequence
Target Sequence 
>C. ELEGANS:185670_AT
aacgaatgactctgaagtcggcaccaagcttgaaatcactttttgtcgtcgggaaatttt
cgatcctgtggttttcgattttcagtctcaaaatcgaaaaatatccgaaaacgacggatt
ggtgaaaatcacgacagaaaataaggaaaagaatatacttttgaaatttgttcccaggga
ttatttggaagacatcaaatgcgttatcgtcaccgccgtcaaatctcttgctgtcctcaa
tattccactaaaactagccgttgatcttcaaattgtggaggtgctaactcccttatcaag
ctccccacttctcaatggaccaatccatgagattttgaagaagctcgaggggaaaagaga
gaaagaaaattctggaaagagcccgctgaaaaagaagacgtctatcagaagagtttcaag
cacgaaaggaggatcaaagaagaggaggtctagtctagtgacaaagaagattcaggaggt
tccaccgaaagatgaaccccttgagaaggagaactgtaaaactacctcaaatcgctcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGAATGACTCTGAAGTCGGCACC 442 143 540 Antisense
AGTCGGCACCAAGCTTGAAATCACT 262 61 555 Antisense
TGAAATCACTTTTTGTCGTCGGGAA 503 571 570 Antisense
GTCGTCGGGAAATTTTCGATCCTGT 350 471 584 Antisense
TGTGGTTTTCGATTTTCAGTCTCAA 286 555 606 Antisense
ATCAAATGCGTTATCGTCACCGCCG 599 25 733 Antisense
AAATCTCTTGCTGTCCTCAATATTC 452 117 760 Antisense
ATTCCACTAAAACTAGCCGTTGATC 214 7 781 Antisense
GGAGGTGCTAACTCCCTTATCAAGC 426 515 816 Antisense
GAAGATTCAGGAGGTTCCACCGAAA 224 337 1005 Antisense
TGTAAAACTACCTCAAATCGCTCTA 178 557 1054 Antisense
Sequence Source Affymetrix Proprietary Database