[Home] | [Total List]

[185669_at]

Description Y75B8A.27 /REP_DB=WormBase Gene ID /WP=CE23038 /TR=Q9XW82 /GB=CAA22087.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 2.6
(-3)
A 		4.8
(0.6)
A 		4.8
(0.6)
A 		6.3
(3)
A 		4
B 4.9
(-0.7)
A 		7.5
(3)
A 		3.3
(-3)
A 		4.8
(-0.9)
A 		4
C 17.6
(-1.8)
A 		34.4
(0.3)
A 		7.9
(-3)
A 		55.5
(3)
A 		48
avr 8.4
(-1.9) 		15.6
(0.7) 		5.3
(-3) 		22.2
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 18.8
(-0.8)
A 		3.3
(-3)
A 		7.2
(-2.4)
A 		28.1
(0.5)
A 		45.6
(3)
A 		5.9
(-2.6)
A 		42
B 8
(-2.2)
A 		8
(-2.2)
A 		6.2
(-2.4)
A 		42.6
(3)
A 		19.3
(-0.5)
A 		2.5
(-3)
A 		40
C 34.6
(0.4)
A 		39.3
(1)
A 		4.2
(-3)
A 		57.2
(3)
A 		43.7
(1.5)
A 		4.4
(-3)
A 		53
avr 20.5
(-0.5) 		16.9
(-1) 		5.9
(-2.7) 		42.6
(3) 		36.2
(2) 		4.3
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.9
(-3)
A 		1
(-1)
A 		1.2
(3)
A 		0.9
(-3)
A 		0
B 1.6
(1.4)
A 		1.9
(3)
A 		0.8
(-3)
A 		1
(-1.9)
A 		1
C 5.8
(-0.5)
A 		9.9
(3)
A 		2.8
(-3)
A 		9.4
(2.6)
A 		7
avr 2.8
(-0.3) 		4.3
(3) 		1.6
(-3) 		3.8
(1.9) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.5
(-1.9)
A 		1.2
(-3)
A 		1.6
(-2.8)
A 		7.1
(-0.2)
A 		13.8
(3)
A 		1.4
(-2.9)
A 		13
B 2.8
(-1.9)
A 		2.7
(-2)
A 		1.5
(-2.7)
A 		11.3
(3)
A 		7.8
(1)
A 		0.9
(-3)
A 		10
C 12.8
(2.4)
A 		12
(2)
A 		1.1
(-3)
A 		11.5
(1.8)
A 		14.2
(3)
A 		1.5
(-2.8)
A 		13
avr 6.4
(-0.1) 		5.3
(-0.7) 		1.4
(-2.9) 		10
(1.9) 		11.9
(3) 		1.3
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185669_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7200
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.27 NCBI
Target Description Y75B8A.27 /REP_DB=WormBase Gene ID /WP=CE23038 /TR=Q9XW82 /GB=CAA22087.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027776(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027776 NCBI Caenorhabditis elegans Y75B8A.39 (Y75B8A.39) mRNA, complete cds. 11/11 None
GENEFINDER00000020198 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12307669:12314278:1 11/11 None
Y75B8A.39 ENSEMBL cdna:known chromosome:CEL140:III:12313162:12314278:1 gene:Y75B8A.39 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12307664-12314274(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B8A.39
Entrez Gene 3565029 Entrez gene
SwissProt Q67X95 EMBL-EBI
WormBase CE37299 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22087 Hypothetical protein Y75B8A.27 [Caenorhabditis elegans] ref|NP_499599.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-92) [Caenorhabditis elegans] 0.0
blast CAH19095 Hypothetical protein Y75B8A.39 [Caenorhabditis elegans] ref|NP_001022947.1| Y75B8A.39 [Caenorhabditis elegans] 1.0E-124
blast CAH19095 Hypothetical protein Y75B8A.39 [Caenorhabditis elegans] ref|NP_001022947.1| Y75B8A.39 [Caenorhabditis elegans] 1.0E-122
blast CAA22088 Hypothetical protein Y75B8A.28 [Caenorhabditis elegans] ref|NP_499600.1| Y75B8A.28 [Caenorhabditis elegans] 1.0E-27
blast CAA22088 Hypothetical protein Y75B8A.28 [Caenorhabditis elegans] ref|NP_499600.1| Y75B8A.28 [Caenorhabditis elegans] 2.0E-13
Sequence
Target Sequence 
>C. ELEGANS:185669_AT
aaattgcactcggctgtgtgtttgaagaagaaaaagcagaatttgacagataaccaggaa
ctgtgtgacaagcttcaactagaaataaacattttacagtcacaaattcatgaaaaagag
aaaactttgtgcctcggcagttgccaggaagacctgttcaactttttgcagtattataat
aataacaaacaggccattgaaaaaatggtagaacatgggaaaagccaagatcaaaattta
ataaaacgacaaaaagcactagctgatgcagaaaacgagttgaaagtcaaaaaggaacac
aatgacaataaaagggagatggcagtcagagaaaatgtgagtactgtgacaattgctact
cggtacagtcgtgcaaagttcaattgtgacatgtgtttttttagtgtgaaggctatgatt
ttagaatatgaaattcgaaagtgccaccaaatacttgatctactcaatcagatttacaac
ttacgggtttcttgtattcaatatgtaatcacatttcaacttccattaatcatgcacatt
ccatgcaatgtggcggtcagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTGCACTCGGCTGTGTGTTTGA 641 115 1375 Antisense
GGAACTGTGTGACAAGCTTCAACTA 15 529 1431 Antisense
AGAGAAAACTTTGTGCCTCGGCAGT 95 63 1491 Antisense
CTCGGCAGTTGCCAGGAAGACCTGT 255 231 1507 Antisense
GAAGACCTGTTCAACTTTTTGCAGT 342 339 1522 Antisense
ACTGTGACAATTGCTACTCGGTACA 250 93 1717 Antisense
GCTACTCGGTACAGTCGTGCAAAGT 391 297 1729 Antisense
GTGCCACCAAATACTTGATCTACTC 94 479 1815 Antisense
CTTACGGGTTTCTTGTATTCAATAT 110 221 1854 Antisense
AACTTCCATTAATCATGCACATTCC 415 139 1892 Antisense
ATTCCATGCAATGTGGCGGTCAGTC 596 5 1912 Antisense
Sequence Source Affymetrix Proprietary Database