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[185668_s_at]

Description C29H12.6 /REP_DB=WormBase Gene ID /WP=CE02519 /TR=Q18314 /GB=AAC46698.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 23      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 61      6grp_total > 13      4grp_total > 47      6grp_highest_sub > De      6grp_high1_sub > 02      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 429
1 2 3 4 range
A 565.9
(3)
P 		315.1
(-1.2)
P 		205.2
(-3)
P 		266.2
(-2)
P 		361
B 581.3
(3)
P 		280.6
(-1.6)
P 		189.3
(-3)
P 		290.1
(-1.5)
P 		392
C 618.3
(3)
P 		265.4
(-2.3)
P 		221.6
(-3)
P 		316.6
(-1.6)
P 		397
avr 588.5
(3) 		287
(-1.7) 		205.4
(-3) 		291
(-1.7) 		383

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 430
1 2 3 4 5 6 range
A 624.1
(3)
P 		538.6
(1.8)
P 		477.6
(0.9)
P 		293.4
(-1.8)
P 		418.4
(0)
P 		209.1
(-3)
P 		415
B 534.8
(2.3)
P 		574.3
(3)
P 		516.4
(2)
P 		462
(1)
P 		372.5
(-0.5)
P 		232.2
(-3)
P 		342
C 443.7
(0.7)
P 		602
(3)
P 		362.1
(-0.5)
P 		466.5
(1)
P 		258.9
(-2)
P 		194.1
(-3)
P 		408
avr 534.2
(2.4) 		571.6
(3) 		452
(1) 		407.3
(0.3) 		349.9
(-0.7) 		211.8
(-3) 		360
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 206.1
(3)
P 		68.4
(-1.9)
P 		53.6
(-2.5)
P 		39
(-3)
P 		167
B 185.4
(3)
P 		69.3
(-1.9)
P 		43.9
(-3)
P 		61.8
(-2.2)
P 		142
C 204.7
(3)
P 		76.3
(-2.1)
P 		77.2
(-2.1)
P 		53.4
(-3)
P 		151
avr 198.7
(3) 		71.3
(-2.2) 		58.2
(-2.7) 		51.4
(-3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 115
(-0.3)
P 		191.5
(3)
P 		104
(-0.7)
P 		74.4
(-2)
P 		126.3
(0.2)
P 		50.9
(-3)
P 		141
B 186.1
(2.7)
P 		191.1
(3)
P 		125.4
(-0.8)
P 		122.4
(-0.9)
P 		151.3
(0.7)
P 		86.6
(-3)
P 		105
C 164.4
(2)
P 		183.7
(3)
P 		92.2
(-1.6)
P 		93.8
(-1.5)
P 		83.8
(-2)
P 		65
(-3)
P 		119
avr 155.2
(1.3) 		188.8
(3) 		107.2
(-1) 		96.9
(-1.5) 		120.5
(-0.4) 		67.5
(-3) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185668_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4652
Sequence Type Exemplar sequence
Representative Public ID C29H12.6 NCBI
Target Description C29H12.6 /REP_DB=WormBase Gene ID /WP=CE02519 /TR=Q18314 /GB=AAC46698.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062824(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062824 NCBI Caenorhabditis elegans C29H12.6 (C29H12.6) mRNA, complete cds. 10/11 None
GENEFINDER00000038446 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6114636:6119396:-1 11/11 None
C29H12.6 ENSEMBL cdna:known chromosome:CEL140:II:6114377:6118217:-1 gene:C29H12.6 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038440 8/11 Cross Hyb Matching Probes None
SNAP00000038441 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6114632-6116676(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29H12.6
Entrez Gene 174021 Entrez gene
SwissProt Q18314 EMBL-EBI
WormBase CE29683 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46698 Hypothetical protein C29H12.6 [Caenorhabditis elegans] ref|NP_495225.2| C29H12.6 [Caenorhabditis elegans] 1.0E-162
blast AAC46698 Hypothetical protein C29H12.6 [Caenorhabditis elegans] ref|NP_495225.2| C29H12.6 [Caenorhabditis elegans] 1.0E-156
blast CAE59249 Hypothetical protein CBG02575 [Caenorhabditis briggsae] 1.0E-146
blast CAE59249 Hypothetical protein CBG02575 [Caenorhabditis briggsae] 1.0E-141
Sequence
Target Sequence 
>C. ELEGANS:185668_S_AT
gttccagcactttgtgtggcaagcccggatacgagtatgtgcagttcaggatatgcttca
catgattccagtcccgacacttcaatggtttggacgaatagtggagaatggcagaagcat
tatgacaatacagcgaatatatatcacgagcttatgagtgcatcctcttatcattcgctt
cgtccaacacctagtcctaaacatgaaagggcagaatctccaatttacgcagaaccatgg
acatctgcttgtggtccaatggtggttaaaaatagaacctatcgcccggcatctccagtc
tacgctcaaccattttccgagcactatcataaggtctcaccacgacgaaatttcaaggat
atgtcggatgatgagctggctcgagatgaatttctttatgagttagatcaacaaatacat
gagttgcagccttaccgttggtttacttccaaattagtaggagcattcttaataaccatg
tacctttttgaaatgcgatcagaagaactccgtgaaatggtggatcgagctcgcactca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCCAGCACTTTGTGTGGCAAGCC 186 441 133 Antisense
GTGGCAAGCCCGGATACGAGTATGT 354 491 148 Antisense
TCCAGTCCCGACACTTCAATGGTTT 378 279 199 Antisense
GAGCTTATGAGTGCATCCTCTTATC 687 387 280 Antisense
TCGTCCAACACCTAGTCCTAAACAT 392 599 312 Antisense
AGGGCAGAATCTCCAATTTACGCAG 297 57 340 Antisense
GACATCTGCTTGTGGTCCAATGGTG 449 369 372 Antisense
GTCTACGCTCAACCATTTTCCGAGC 268 469 430 Antisense
AGCACTATCATAAGGTCTCACCACG 228 77 452 Antisense
TGCAGCCTTACCGTTGGTTTACTTC 145 569 557 Antisense
AAATGGTGGATCGAGCTCGCACTCA 323 121 647 Antisense
Sequence Source Affymetrix Proprietary Database