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[185665_at]

Description T24A6.12 /REP_DB=WormBase Gene ID /WP=CE14146 /TR=O61943 /GB=AAC17799.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 02      6grp_cgc > 47      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 3
(-2.7)
A 		2.5
(-3)
A 		3.7
(-2.4)
A 		14.4
(3)
A 		12
B 3.3
(-3)
A 		4.9
(-2.7)
A 		5.1
(-2.7)
A 		41.5
(3)
A 		38
C 3.2
(-1.2)
A 		3.1
(-1.3)
A 		0.9
(-3)
A 		8.7
(3)
A 		8
avr 3.2
(-3) 		3.5
(-2.9) 		3.2
(-3) 		21.5
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 7.1
(-1.9)
A 		2.1
(-3)
A 		23.8
(1.9)
A 		4
(-2.6)
A 		3.5
(-2.7)
A 		28.5
(3)
A 		26
B 3.9
(-2.7)
A 		6.4
(-2.2)
A 		4.1
(-2.7)
A 		2.4
(-3)
A 		2.4
(-3)
A 		34.3
(3)
A 		32
C 19.1
(3)
A 		3.7
(-2.8)
A 		3.8
(-2.8)
A 		14.8
(1.4)
A 		3.2
(-3)
A 		13.8
(1)
A 		16
avr 10
(-1.1) 		4.1
(-2.7) 		10.6
(-1) 		7.1
(-1.9) 		3
(-3) 		25.5
(3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.1
(-1)
A 		0.6
(-3)
A 		1
(-1.4)
A 		2.1
(3)
A 		2
B 1
(-3)
A 		1.2
(-2.8)
A 		1.2
(-2.8)
A 		8.9
(3)
A 		8
C 1.1
(1)
A 		0.9
(0)
A 		0.3
(-3)
A 		1.5
(3)
A 		1
avr 1.1
(-2.5) 		0.9
(-2.8) 		0.8
(-3) 		4.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.3
(-2.5)
A 		0.8
(-3)
A 		5.2
(1.3)
A 		1
(-2.8)
A 		1.1
(-2.7)
A 		6.9
(3)
A 		6
B 1.4
(-2.6)
A 		2.1
(-2.3)
A 		1
(-2.8)
A 		0.6
(-3)
A 		1
(-2.8)
A 		12.8
(3)
A 		12
C 7.1
(3)
A 		1.1
(-2.9)
A 		1
(-3)
A 		3
(-1)
A 		1
(-3)
A 		4.6
(0.5)
A 		6
avr 3.3
(-1.1) 		1.3
(-2.7) 		2.4
(-1.8) 		1.5
(-2.6) 		1
(-3) 		8.1
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185665_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15036
Sequence Type Exemplar sequence
Representative Public ID T24A6.12 NCBI
Target Description T24A6.12 /REP_DB=WormBase Gene ID /WP=CE14146 /TR=O61943 /GB=AAC17799.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T24A6.12 ENSEMBL cdna:pseudogene chromosome:CEL140:V:3543907:3544795:-1 gene:T24A6.12 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027437 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3543906-3544795(-) 100.0 100.0
Public Domain and Genome References
Ensembl T24A6.12
Sequence
Target Sequence 
>C. ELEGANS:185665_AT
gattgttttccatttacatttttatttttttcctgatattatttgatcaatttatcatgt
ttggatactgtgagaatactattgatactcccattgattgcgacaattttctttgctctt
ttaatgagtgctacattatgtattgggtgaaaaatgaacaaattgtgttcagtatgattg
tagctttgactatattgctatcagtgaagcttgtagtttacactgtcctcgcacaaaatc
aatcggctcaagtttattcaagagctacccaaatagctatgttcgactcgacgactctta
ttttatttaatcttatacctgttctgtctactttttggtttgaatctgttgattatcaaa
cattttcgtcaatcactactctcaccagaaatcttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGTTTTCCATTTACATTTTTAT 113 435 185 Antisense
ATTGATACTCCCATTGATTGCGACA 135 5 265 Antisense
TGATTGCGACAATTTTCTTTGCTCT 705 563 279 Antisense
AGCTTTGACTATATTGCTATCAGTG 219 79 366 Antisense
AGCTTGTAGTTTACACTGTCCTCGC 315 79 392 Antisense
GTCCTCGCACAAAATCAATCGGCTC 286 477 409 Antisense
CCCAAATAGCTATGTTCGACTCGAC 250 257 452 Antisense
TCGACTCGACGACTCTTATTTTATT 651 599 467 Antisense
AATCTTATACCTGTTCTGTCTACTT 492 169 493 Antisense
AACATTTTCGTCAATCACTACTCTC 557 137 543 Antisense
ATCACTACTCTCACCAGAAATCTTG 129 29 556 Antisense
Sequence Source Affymetrix Proprietary Database