[Home] | [Total List]

[185664_at]

Description C36C5.14 /REP_DB=WormBase Gene ID /WP=CE08603 /TR=O16408 /GB=AAB65923.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 34.6
(-1.2)
A 		11.9
(-3)
A 		55.2
(0.4)
A 		88.6
(3)
P 		77
B 38.6
(1.3)
A 		25.3
(-3)
A 		43.8
(3)
A 		35.6
(0.3)
A 		19
C 7.9
(-3)
A 		52.3
(-0.8)
A 		85.3
(0.8)
A 		131
(3)
A 		123
avr 27
(-3) 		29.8
(-2.7) 		61.4
(0.6) 		85.1
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 44.3
(2)
A 		19.6
(-1.3)
A 		44.6
(2)
A 		7.2
(-3)
A 		36.1
(0.9)
A 		52.1
(3)
A 		45
B 27.8
(0)
A 		49.1
(3)
A 		27
(-0.1)
A 		20.8
(-0.9)
A 		37.6
(1.4)
M 		5.8
(-3)
A 		43
C 14.3
(-3)
A 		94.9
(3)
A 		38.6
(-1.2)
A 		29.4
(-1.9)
A 		43.1
(-0.9)
A 		44.1
(-0.8)
A 		81
avr 28.8
(-1.4) 		54.5
(3) 		36.7
(-0) 		19.1
(-3) 		38.9
(0.4) 		34
(-0.5) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 12.6
(2.1)
A 		2.6
(-3)
A 		14.4
(3)
A 		13
(2.3)
P 		12
B 12.3
(3)
A 		6.3
(-3)
A 		10.2
(0.9)
A 		7.6
(-1.7)
A 		6
C 2.6
(-3)
A 		15
(-0.3)
A 		29.7
(3)
A 		22.1
(1.3)
A 		27
avr 9.2
(-2.3) 		8
(-3) 		18.1
(3) 		14.2
(0.7) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 8.2
(0.5)
A 		7
(-0.1)
A 		9.7
(1.3)
A 		1.8
(-3)
A 		10.9
(2)
A 		12.7
(3)
A 		11
B 9.7
(0.2)
A 		16.4
(3)
A 		6.6
(-1.1)
A 		5.5
(-1.6)
A 		15.3
(2.5)
M 		2.2
(-3)
A 		14
C 5.3
(-3)
A 		28.9
(3)
A 		9.8
(-1.9)
A 		5.9
(-2.8)
A 		13.9
(-0.8)
A 		14.8
(-0.6)
A 		24
avr 7.7
(-1.5) 		17.4
(3) 		8.7
(-1) 		4.4
(-3) 		13.4
(1.2) 		9.9
(-0.5) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185664_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15024
Sequence Type Exemplar sequence
Representative Public ID C36C5.14 NCBI
Target Description C36C5.14 /REP_DB=WormBase Gene ID /WP=CE08603 /TR=O16408 /GB=AAB65923.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071470(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071470 NCBI Caenorhabditis elegans C36C5.14 (C36C5.14) mRNA, complete cds. 11/11 None
SNAP00000036660 ENSEMBL cdna:SNAP chromosome:CEL140:V:3164545:3165342:-1 11/11 None
GENEFINDER00000036672 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3164545:3165342:-1 11/11 None
C36C5.14 ENSEMBL cdna:known chromosome:CEL140:V:3164545:3165342:-1 gene:C36C5.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3164544-3165342(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36C5.14
Entrez Gene 183270 Entrez gene
SwissProt O16408 EMBL-EBI
WormBase CE08603 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503871 C36C5.14 [Caenorhabditis elegans] gb|AAB65923.1| Hypothetical protein C36C5.14 [Caenorhabditis elegans] 1.0E-117
blast NP_503873 C36C5.15 [Caenorhabditis elegans] gb|AAB65922.1| Hypothetical protein C36C5.15 [Caenorhabditis elegans] 7.0E-82
blast AAK72054 Hypothetical protein C03G6.5 [Caenorhabditis elegans] ref|NP_504881.1| C03G6.5 [Caenorhabditis elegans] 7.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 1.1E-101
Sequence
Target Sequence 
>C. ELEGANS:185664_AT
atgataggcttactcaagctcgccctcatcggtactatgctattgggagtggctcatgga
gcaagcctagcatcggcaaagggttcagactgcactgtaaaagatacaaacgctgcagtt
agatgtgttttgattacgagagacttcctgggggaagttgacgagctcgatatgaacgat
aaggatgaactgaaagatttcaagaaatcgtgtgatactgttcaaagctgctggaacaat
cttacatgcaccgcaaaaagcgaagatgaaaagaaacaatatgttgagaacatcaaaaac
tactgtgatgctgcgatgtatgtctacgatggtttttccaaatgtggtgataagctgaat
gcaaaaaaatcgaaatgttttgatgactgggacccaattccaaacaaaactcattcggaa
aaagatgcggcaaaggtcgagaaaattaaaaatgacgcttgcaagacatatttcggaaag
gataactgcatgaaacaggaggttacggaaacttgcggcaaacaagaatgggactcactc
cacaagcatttccttcatctttctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATAGGCTTACTCAAGCTCGCCC 276 47 13 Antisense
GCCCTCATCGGTACTATGCTATTGG 38 287 34 Antisense
GCTCATGGAGCAAGCCTAGCATCGG 663 299 64 Antisense
GGCAAAGGGTTCAGACTGCACTGTA 86 535 87 Antisense
GATTACGAGAGACTTCCTGGGGGAA 182 429 144 Antisense
TCCTGGGGGAAGTTGACGAGCTCGA 377 593 158 Antisense
GTGTGATACTGTTCAAAGCTGCTGG 15 489 222 Antisense
GCTGGAACAATCTTACATGCACCGC 229 295 242 Antisense
GTGATGCTGCGATGTATGTCTACGA 60 485 317 Antisense
AGAATGGGACTCACTCCACAAGCAT 366 75 537 Antisense
CAAGCATTTCCTTCATCTTTCTGGA 257 185 555 Antisense
Sequence Source Affymetrix Proprietary Database