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[185663_s_at]

Description F20E11.12 /REP_DB=WormBase Gene ID /WP=CE18621 /TR=Q9XV76 /GB=CAB04149.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 06      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 34.7
(1.1)
A 		23.7
(-3)
A 		39.8
(3)
A 		35.6
(1.4)
A 		16
B 62.1
(3)
A 		10
(-3)
A 		48.8
(1.5)
A 		56
(2.3)
A 		52
C 43
(-0.2)
A 		31.9
(-1)
A 		1.5
(-3)
A 		91.6
(3)
P 		90
avr 46.6
(0.8) 		21.9
(-3) 		30
(-1.8) 		61.1
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 2.6
(-3)
A 		43.4
(1.4)
A 		57.9
(3)
A 		20.3
(-1.1)
A 		20.7
(-1)
A 		6.6
(-2.6)
A 		55
B 24
(-1.5)
A 		24.1
(-1.5)
A 		17.8
(-3)
A 		19.9
(-2.5)
A 		43.2
(3)
M 		29.2
(-0.3)
A 		25
C 26
(-0.9)
A 		55.5
(2)
A 		46.2
(1.1)
A 		65.9
(3)
A 		22.6
(-1.3)
A 		5.1
(-3)
A 		61
avr 17.5
(-2.1) 		41
(3) 		40.6
(2.9) 		35.4
(1.8) 		28.8
(0.3) 		13.6
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 12.6
(3)
A 		5.1
(-3)
A 		10.4
(1.2)
A 		5.2
(-2.9)
A 		8
B 19.8
(3)
A 		2.5
(-3)
A 		11.3
(0.1)
A 		11.9
(0.3)
A 		17
C 14.2
(2.5)
A 		9.2
(0.5)
A 		0.5
(-3)
A 		15.4
(3)
P 		15
avr 15.5
(3) 		5.6
(-3) 		7.4
(-1.9) 		10.8
(0.2) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 0.5
(-3)
A 		15.4
(3)
A 		12.6
(1.9)
A 		5.2
(-1.1)
A 		6.2
(-0.7)
A 		1.6
(-2.6)
A 		15
B 8.4
(-1.1)
A 		8
(-1.3)
A 		4.3
(-3)
A 		5.3
(-2.5)
A 		17.5
(3)
M 		10.9
(0)
A 		13
C 9.6
(0.1)
A 		16.9
(3)
A 		11.7
(0.9)
A 		13.3
(1.6)
A 		7.3
(-0.8)
A 		1.7
(-3)
A 		15
avr 6.2
(-2) 		13.4
(3) 		9.5
(0.3) 		7.9
(-0.8) 		10.3
(0.9) 		4.7
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185663_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12874
Sequence Type Exemplar sequence
Representative Public ID F20E11.12 NCBI
Target Description F20E11.12 /REP_DB=WormBase Gene ID /WP=CE18621 /TR=Q9XV76 /GB=CAB04149.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074948(11), NM_075011(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074948 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-155) (srh-155) mRNA, complete cds. 11/11 A 
NM_075011 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-154) (srh-154) mRNA, complete cds. 11/11 A 
GENEFINDER00000027637 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17441688:17444351:1 11/11 None
F40D4.2 ENSEMBL cdna:known chromosome:CEL140:V:17182727:17184134:1 gene:F40D4.2 11/11 A 
F20E11.12 ENSEMBL cdna:known chromosome:CEL140:V:17443133:17444351:1 gene:F20E11.12 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17443132-17444351(+) 100.0 100.0
chrV:17182726-17184134(+) 93.35 93.35
Public Domain and Genome References
Gene Title

Gene Symbol srh-154
srh-155
Ensembl F40D4.2
F20E11.12
Entrez Gene 184740 Entrez gene
185520 Entrez gene
SwissProt Q9XV76 EMBL-EBI
Q9U3G3 EMBL-EBI
WormBase CE18621 Wormbase
CE19836 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB63199 Hypothetical protein F40D4.2 [Caenorhabditis elegans] ref|NP_507349.1| Serpentine Receptor, class H family member (srh-155) [Caenorhabditis elegans] 0.0
blast CAB04149 Hypothetical protein F20E11.12 [Caenorhabditis elegans] ref|NP_507412.1| Serpentine Receptor, class H family member (srh-154) [Caenorhabditis elegans] 0.0
blast T21162 hypothetical protein F20E11.11 - Caenorhabditis elegans 0.0
blast CAB04149 Hypothetical protein F20E11.12 [Caenorhabditis elegans] ref|NP_507412.1| Serpentine Receptor, class H family member (srh-154) [Caenorhabditis elegans] 1.0E-174
blast CAB63199 Hypothetical protein F40D4.2 [Caenorhabditis elegans] ref|NP_507349.1| Serpentine Receptor, class H family member (srh-155) [Caenorhabditis elegans] 1.0E-174
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.9E-52
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.9E-87
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507349.1 6 53-75,95-117,138-160,197-219,240-262,277-296
NP_507412.1 6 53-75,95-117,138-160,197-219,240-262,277-296
F40D4.2 6 53-75,95-117,138-160,197-219,240-262,277-296
F20E11.12 6 53-75,95-117,138-160,197-219,240-262,277-296
GENEFINDER00000027637 13 15-37,50-72,87-106,119-141,180-202,215-245,300-322,404-426,446-468,489-511,548-570,591-613,628-647
Sequence
Target Sequence 
>C. ELEGANS:185663_S_AT
gtttgtcacagctaattatgtttatgctacattgtaccctgctcccatatactttttgct
tcccgaccaagaatatggaagaattttatcgaaaagtaaaaatccgtgtattccgaacga
atatttaaaccatcctaatttctttttgcttgatctcgatggaaagtatacttcaatttg
tatcctgcttatgttgagttctctggtctctcaaatgttttggcaaattggactgatttt
ccgtcagatgctcaaaaatccgtccgtttctcaaaatacgcaccgactacaataccagtt
tttaattgcaatgagcttgcaaggcaccattccaatgattatcattgtttttccagcttt
tttctatgttgtctcaattatgttaaattatcataatcaaggtgcaaataacttatcgtt
tcttatcatttccatgcatggagttctatcaacgttgacaatgctcatggcacacagacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGTCACAGCTAATTATGTTTAT 53 453 429 Antisense
TTATGTTTATGCTACATTGTACCCT 132 679 444 Antisense
ATTTCTTTTTGCTTGATCTCGATGG 239 15 566 Antisense
ATGTTGAGTTCTCTGGTCTCTCAAA 309 47 619 Antisense
AGTTCTCTGGTCTCTCAAATGTTTT 373 63 625 Antisense
GCAAATTGGACTGATTTTCCGTCAG 562 315 651 Antisense
TTCTCAAAATACGCACCGACTACAA 708 689 696 Antisense
TCCAGCTTTTTTCTATGTTGTCTCA 362 589 780 Antisense
AGCTTTTTTCTATGTTGTCTCAATT 420 79 783 Antisense
GGAGTTCTATCAACGTTGACAATGC 446 517 868 Antisense
TGACAATGCTCATGGCACACAGACC 383 571 884 Antisense
Sequence Source Affymetrix Proprietary Database