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[185661_at]

Description H06I04.6 /REP_DB=WormBase Gene ID /WP=CE20934 /TR=Q9N5P2 /GB=AAF39871.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 19      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 70      6grp_total > 19      4grp_total > 11      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 506
1 2 3 4 range
A 362.9
(-1.9)
P 		437.2
(-1)
P 		279.2
(-3)
P 		742.7
(3)
P 		464
B 416.5
(-1)
P 		282.4
(-3)
P 		293.3
(-2.8)
P 		683.9
(3)
P 		402
C 349.5
(-2.3)
P 		319.7
(-2.6)
P 		287.6
(-3)
P 		785.6
(3)
P 		498
avr 376.3
(-1.8) 		346.4
(-2.2) 		286.7
(-3) 		737.4
(3) 		451

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 387.3
(3)
P 		302.2
(0.4)
P 		253.1
(-1.1)
P 		252.6
(-1.2)
P 		343.8
(1.7)
P 		193.2
(-3)
P 		194
B 320.9
(2.4)
P 		298.2
(0.9)
P 		329.8
(3)
P 		251.9
(-2.2)
P 		327.4
(2.8)
P 		240.7
(-3)
P 		89
C 389.3
(3)
P 		301
(-0.6)
P 		243
(-3)
P 		267.2
(-2)
P 		343.8
(1.1)
P 		256.6
(-2.4)
P 		146
avr 365.8
(3) 		300.5
(0.1) 		275.3
(-1) 		257.2
(-1.8) 		338.3
(1.8) 		230.2
(-3) 		136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 132.1
(3)
P 		94.9
(-0.8)
P 		73
(-3)
P 		108.7
(0.6)
P 		59
B 132.8
(2)
P 		69.7
(-2.9)
P 		68
(-3)
P 		145.7
(3)
P 		78
C 115.7
(0.5)
P 		91.9
(-3)
P 		100.2
(-1.8)
P 		132.5
(3)
P 		41
avr 126.9
(2.7) 		85.5
(-2.4) 		80.4
(-3) 		129
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 71.4
(-0.6)
P 		107.5
(3)
P 		55.1
(-2.2)
P 		64.1
(-1.3)
P 		103.7
(2.6)
P 		47
(-3)
P 		61
B 111.6
(1.1)
P 		99.3
(-0)
P 		80.1
(-1.8)
P 		66.7
(-3)
P 		133
(3)
P 		89.8
(-0.9)
P 		66
C 144.3
(3)
P 		91.8
(-0.5)
P 		61.8
(-2.5)
P 		53.7
(-3)
P 		111.2
(0.8)
P 		85.9
(-0.9)
P 		91
avr 109.1
(2.2) 		99.5
(1.2) 		65.7
(-2.5) 		61.5
(-3) 		116
(3) 		74.2
(-1.6) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185661_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6456
Sequence Type Exemplar sequence
Representative Public ID H06I04.6 NCBI
Target Description H06I04.6 /REP_DB=WormBase Gene ID /WP=CE20934 /TR=Q9N5P2 /GB=AAF39871.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027467
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000025126 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3061018:3064312:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027467 8/11 Cross Hyb Matching Probes None
SNAP00000025108 6/11 Cross Hyb Matching Probes None
SNAP00000025109 3/11 Cross Hyb Matching Probes None
H06I04.6 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3061756-3064312(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU20844 Hypothetical protein H06I04.6 [Caenorhabditis elegans] ref|NP_001022638.1| H06I04.6 [Caenorhabditis elegans] 8.0E-42
blast CAE74679 Hypothetical protein CBG22489 [Caenorhabditis briggsae] 1.0E-29
blast CAE74664 Hypothetical protein CBG22465 [Caenorhabditis briggsae] 4.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 5.2E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000025126 2 5-22,245-267
Sequence
Target Sequence 
>C. ELEGANS:185661_AT
tcgggagcacgaacatcttctggaggtggttggctcggtggtggctcgaaaactagtgga
gctggaagaaatgattactcaaggggtaccaacttgggagccaacacgaatcggggatca
aatagcggtggaggatggaattcacactcgaataccggaggaaactggaataataataat
catggaagtagtatgaatactggaagatggacaaattccggtttgggatcgcgatctcga
ggaagtacatttaaaaatatggttgttggagctgccgccggatacttgacgtatcaagca
ggaaaggctatcatcagagcagcagccggaccaatgatgtggaacaatcgcccctactat
tggggttcgaactactatcggcagagcccggggcacacgaatatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGGAGCACGAACATCTTCTGGAG 454 605 169 Antisense
TTGGCTCGGTGGTGGCTCGAAAACT 451 489 198 Antisense
GGGAGCCAACACGAATCGGGGATCA 19 495 264 Antisense
AATTCCGGTTTGGGATCGCGATCTC 348 177 382 Antisense
AAATATGGTTGTTGGAGCTGCCGCC 432 115 423 Antisense
CTGCCGCCGGATACTTGACGTATCA 470 237 440 Antisense
TATCATCAGAGCAGCAGCCGGACCA 543 657 477 Antisense
AATGATGTGGAACAATCGCCCCTAC 587 159 501 Antisense
CAATCGCCCCTACTATTGGGGTTCG 214 167 513 Antisense
GTTCGAACTACTATCGGCAGAGCCC 470 439 533 Antisense
CAGAGCCCGGGGCACACGAATATGT 586 203 550 Antisense
Sequence Source Affymetrix Proprietary Database