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[185659_at]

Description F14D12.1 /REP_DB=WormBase Gene ID /WP=CE27962 /TR=Q19448 /GB=AAA82336.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 34      6grp_total > 02      4grp_total > 31      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 242
1 2 3 4 range
A 194.1
(3)
P 		56.3
(-3)
A 		72.5
(-2.3)
A 		137.7
(0.5)
M 		138
B 208.3
(3)
P 		64.7
(-2.2)
A 		43.6
(-3)
A 		95.6
(-1.1)
P 		165
C 275.3
(3)
P 		33.6
(-3)
A 		64.6
(-2.2)
P 		136
(-0.5)
P 		242
avr 225.9
(3) 		51.5
(-3) 		60.2
(-2.7) 		123.1
(-0.5) 		174

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 96.9
(-1)
A 		161.7
(3)
P 		81.2
(-1.9)
P 		101.4
(-0.7)
P 		78.4
(-2.1)
M 		63.6
(-3)
A 		98
B 101.3
(2.3)
P 		106.5
(3)
P 		77.6
(-1.1)
P 		104.2
(2.7)
P 		86.3
(0.1)
P 		64.1
(-3)
P 		42
C 82.2
(-0.6)
P 		108.2
(3)
P 		65.3
(-3)
P 		82.4
(-0.6)
P 		88.3
(0.2)
P 		77.9
(-1.2)
P 		43
avr 93.5
(-0.4) 		125.5
(3) 		74.7
(-2.3) 		96
(-0.1) 		84.3
(-1.3) 		68.5
(-3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 70.7
(3)
P 		12.2
(-3)
A 		18.9
(-2.3)
A 		20.1
(-2.2)
M 		59
B 66.4
(3)
P 		16
(-2.4)
A 		10.1
(-3)
A 		20.4
(-1.9)
P 		56
C 91.1
(3)
P 		9.7
(-3)
A 		22.5
(-2.1)
P 		22.9
(-2)
P 		81
avr 76.1
(3) 		12.6
(-3) 		17.2
(-2.6) 		21.1
(-2.2) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 17.9
(-2.7)
A 		57.5
(3)
P 		17.7
(-2.7)
P 		25.7
(-1.5)
P 		23.7
(-1.8)
M 		15.5
(-3)
A 		42
B 35.2
(2.9)
P 		35.4
(3)
P 		18.9
(-3)
P 		27.6
(0.2)
P 		35.1
(2.9)
P 		23.9
(-1.2)
P 		17
C 30.5
(2.1)
P 		33
(3)
P 		16.6
(-3)
P 		16.6
(-3)
P 		28.6
(1.4)
P 		26.1
(0.5)
P 		16
avr 27.9
(-0.5) 		42
(3) 		17.7
(-3) 		23.3
(-1.6) 		29.1
(-0.2) 		21.8
(-2) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185659_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17283
Sequence Type Exemplar sequence
Representative Public ID F14D12.1 NCBI
Target Description F14D12.1 /REP_DB=WormBase Gene ID /WP=CE27962 /TR=Q19448 /GB=AAA82336.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076544(11), NM_076545(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076544 NCBI Caenorhabditis elegans F14D12.1b (F14D12.1) mRNA, complete cds. 11/11 None
NM_076545 NCBI Caenorhabditis elegans F14D12.1a (F14D12.1) mRNA, complete cds. 11/11 None
GENEFINDER00000023055 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5603782:5608483:1 11/11 None
F14D12.1a ENSEMBL cdna:known chromosome:CEL140:X:5604534:5608738:1 gene:F14D12.1 11/11 None
F14D12.1b ENSEMBL cdna:known chromosome:CEL140:X:5604534:5609080:1 gene:F14D12.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023052 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5604533-5608697(+) 100.0 100.0
Public Domain and Genome References
Ensembl F14D12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL02488 Hypothetical protein F14D12.1b [Caenorhabditis elegans] ref|NP_508945.1| F14D12.1b [Caenorhabditis elegans] 0.0
blast AAL02487 Hypothetical protein F14D12.1a [Caenorhabditis elegans] ref|NP_508946.1| F14D12.1a [Caenorhabditis elegans] 0.0
blast T16078 hypothetical protein F14D12.1 - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:185659_AT
gattagctgccgggatcaatggatcatttacgaaatatgacggcgatcgaggtacccacg
tgtaccctcaaactcctgaagagaaggaacgaaaaattgaagaattcatcgaggaaagac
gacgcacggcatctaccaggaaagtggaatctccggatttttcaaacgacgttttgggaa
aagtagtttcaaacgaaaccgaaaagtttcgacttatggagcgtcgagcatcatctgtgt
catttaataaagcaaacgctgtacaaatttcacttttgaatgagaaccaaaaaaaagcgg
ccgctttgatcacaaatcataatcgggaaaattcgcagtcagaaagcatggcatcttcat
cagaatccctctcatcagatgctcgttcgaaaatttccataaaaaaacgaagcaactccc
ctccgcgaaccgtcgccccgtgcattctaccaaagcagccgagccaacgaacactgaccg
tagtgaaggaagttccgggaaatcacagcacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTAGCTGCCGGGATCAATGGATC 678 429 1367 Antisense
ATATGACGGCGATCGAGGTACCCAC 112 21 1401 Antisense
GTGTACCCTCAAACTCCTGAAGAGA 200 487 1426 Antisense
CGAGGAAAGACGACGCACGGCATCT 18 251 1476 Antisense
GACTTATGGAGCGTCGAGCATCATC 485 371 1577 Antisense
GCGGCCGCTTTGATCACAAATCATA 258 289 1663 Antisense
CATGGCATCTTCATCAGAATCCCTC 688 209 1713 Antisense
CCCTCTCATCAGATGCTCGTTCGAA 224 259 1733 Antisense
ATTCTACCAAAGCAGCCGAGCCAAC 635 1 1810 Antisense
CGAGCCAACGAACACTGACCGTAGT 444 223 1826 Antisense
GAAGTTCCGGGAAATCACAGCACTA 354 337 1855 Antisense
Sequence Source Affymetrix Proprietary Database