[Home] | [Total List]

[185658_at]

Description F21C10.2 /REP_DB=WormBase Gene ID /WP=CE07117 /TR=Q19668 /GB=AAA97978.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 61.3
(-2.7)
P 		53.4
(-3)
A 		87
(-1.8)
A 		227.1
(3)
P 		174
B 78.8
(-1.4)
A 		68.8
(-1.7)
P 		34.1
(-3)
A 		197.2
(3)
P 		163
C 74.8
(-1.4)
P 		61.1
(-1.9)
A 		31.3
(-3)
A 		195.4
(3)
P 		164
avr 71.6
(-2.2) 		61.1
(-2.6) 		50.8
(-3) 		206.6
(3) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 94.4
(2.9)
A 		58.6
(-0.8)
A 		79
(1.3)
P 		37.6
(-3)
A 		95.5
(3)
M 		61.3
(-0.5)
A 		58
B 101.5
(2.5)
P 		109.7
(3)
M 		65.7
(0.2)
P 		55.7
(-0.4)
A 		70.4
(0.5)
A 		14.8
(-3)
A 		95
C 98.7
(2.1)
P 		111.2
(3)
P 		91.1
(1.6)
A 		26.6
(-3)
A 		64
(-0.3)
A 		50
(-1.3)
A 		85
avr 98.2
(3) 		93.2
(2.5) 		78.6
(1) 		40
(-3) 		76.6
(0.8) 		42
(-2.8) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 22.3
(-0)
P 		11.6
(-3)
A 		22.7
(0.1)
A 		33.2
(3)
P 		22
B 25.1
(0)
A 		17
(-1.4)
P 		7.9
(-3)
A 		42
(3)
P 		34
C 24.7
(0.7)
P 		17.6
(-1.2)
A 		10.9
(-3)
A 		33
(3)
P 		22
avr 24
(-0.3) 		15.4
(-2.6) 		13.8
(-3) 		36.1
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 17.4
(-0.5)
A 		20.9
(0.5)
A 		17.2
(-0.6)
P 		9.5
(-3)
A 		28.8
(3)
M 		14.9
(-1.3)
A 		19
B 35.3
(2.8)
P 		36.5
(3)
M 		16
(-1)
P 		14.8
(-1.2)
A 		28.6
(1.5)
A 		5.5
(-3)
A 		31
C 36.6
(3)
P 		33.9
(2.5)
P 		23.2
(0.4)
A 		5.3
(-3)
A 		20.7
(-0)
A 		16.7
(-0.8)
A 		31
avr 29.8
(2.8) 		30.4
(3) 		18.8
(-0.4) 		9.9
(-3) 		26
(1.7) 		12.4
(-2.3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185658_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12518
Sequence Type Exemplar sequence
Representative Public ID F21C10.2 NCBI
Target Description F21C10.2 /REP_DB=WormBase Gene ID /WP=CE07117 /TR=Q19668 /GB=AAA97978.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F21C10.2
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F21C10.2 F21C10.2 /REP_DB=WormBase Gene ID /WP=CE07117 /TR=Q19668 /GB=AAA97978.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9133652-9134403(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:185658_AT
gaatgtgttgttctggagtttcttgcttctttttccactcttcaacaatgctgaagatag
tctcagagtttatgtaaactccattccaggacaaaccataggtattagtctttacggcca
aaaatattattgggaagggcatgttgtcaacgatacggacaagatttgtaaatacgaatt
aggaaatgatgatgagaaatttaaaaatgtggaatttccaaacgggaaacgaccagcatt
cttgattttcgaatgcaaaagctccgaatcttattgtgggtcagaatgctgtgagaatag
ttcgtggttcacaaagagaaaaaataattcaaaaaatgaggttctagagaaggtctccat
caactctaatacatcggaaaacagtaagcttccaccacttgggcacggctttcaaactat
tggactgaaacaaagtattcctggcataaatgctccatccgtctccaaaaacttcgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGTGTTGTTCTGGAGTTTCTTG 606 331 15 Antisense
TTTTCCACTCTTCAACAATGCTGAA 628 677 45 Antisense
GTAAACTCCATTCCAGGACAAACCA 508 461 88 Antisense
CATAGGTATTAGTCTTTACGGCCAA 331 149 111 Antisense
GGGAAACGACCAGCATTCTTGATTT 543 491 238 Antisense
AGCTCCGAATCTTATTGTGGGTCAG 117 79 274 Antisense
GAAGGTCTCCATCAACTCTAATACA 157 335 363 Antisense
GAAAACAGTAAGCTTCCACCACTTG 214 353 391 Antisense
TGGGCACGGCTTTCAAACTATTGGA 182 555 414 Antisense
TCCTGGCATAAATGCTCCATCCGTC 466 591 453 Antisense
CCATCCGTCTCCAAAAACTTCGATC 566 271 469 Antisense
Sequence Source Affymetrix Proprietary Database