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[185657_at]

Description C14C6.12 /REP_DB=WormBase Gene ID /WP=CE08167 /TR=O44678 /GB=AAB94258.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 11      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 71
(-3)
P 		76.1
(-2.8)
A 		72.1
(-3)
A 		213.1
(3)
P 		142
B 99.2
(-1.7)
A 		113.7
(-0.7)
A 		80.8
(-3)
A 		168
(3)
P 		87
C 104.5
(0.2)
A 		97.1
(-0.6)
A 		74.3
(-3)
A 		131.6
(3)
P 		57
avr 91.6
(-2) 		95.6
(-1.7) 		75.7
(-3) 		170.9
(3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 211
1 2 3 4 5 6 range
A 11
(-3)
A 		58.2
(-1.7)
A 		181.2
(1.8)
P 		222
(3)
P 		101.9
(-0.4)
A 		146.2
(0.8)
P 		211
B 63.2
(-3)
A 		118.8
(1.3)
P 		140.4
(3)
P 		102.5
(0.1)
M 		127.7
(2)
P 		75.1
(-2.1)
P 		77
C 48.1
(-3)
A 		153.1
(0.7)
P 		220
(3)
P 		131.7
(-0.1)
P 		56.2
(-2.7)
A 		74.5
(-2.1)
P 		172
avr 40.8
(-3) 		110
(-0) 		180.5
(3) 		152.1
(1.8) 		95.3
(-0.7) 		98.6
(-0.5) 		140
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 25.8
(0.8)
P 		16.5
(-3)
A 		18.8
(-2.1)
A 		31.2
(3)
P 		15
B 31.6
(1.5)
A 		28.1
(0.3)
A 		18.7
(-3)
A 		35.8
(3)
P 		17
C 34.6
(3)
A 		27.9
(-0.2)
A 		25.9
(-1.2)
A 		22.2
(-3)
P 		12
avr 30.7
(3) 		24.2
(-1.1) 		21.1
(-3) 		29.7
(2.4) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 2
(-3)
A 		20.7
(-0.9)
A 		39.5
(1.1)
P 		56.3
(3)
P 		30.8
(0.2)
A 		35.6
(0.7)
P 		54
B 22
(-3)
A 		39.5
(0.5)
P 		34.1
(-0.6)
P 		27.2
(-2)
M 		51.9
(3)
P 		28
(-1.8)
P 		30
C 17.8
(-3)
A 		46.7
(1.5)
P 		56
(3)
P 		26.5
(-1.6)
P 		18.2
(-2.9)
A 		24.9
(-1.9)
P 		38
avr 13.9
(-3) 		35.6
(1.4) 		43.2
(3) 		36.7
(1.7) 		33.6
(1) 		29.5
(0.2) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185657_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15850
Sequence Type Exemplar sequence
Representative Public ID C14C6.12 NCBI
Target Description C14C6.12 /REP_DB=WormBase Gene ID /WP=CE08167 /TR=O44678 /GB=AAB94258.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070847
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000017701 ENSEMBL cdna:SNAP chromosome:CEL140:V:569919:571034:-1 10/11 None
GENEFINDER00000017703 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:570400:571034:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070847 7/11 Cross Hyb Matching Probes None
C14C6.12 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:570399-571034(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94258 Hypothetical protein C14C6.12 [Caenorhabditis elegans] ref|NP_503248.2| C14C6.12 [Caenorhabditis elegans] 1.0E-49
blast AAB94258 Hypothetical protein C14C6.12 [Caenorhabditis elegans] ref|NP_503248.2| C14C6.12 [Caenorhabditis elegans] 3.0E-44
blast CAE57758 Hypothetical protein CBG00775 [Caenorhabditis briggsae] 2.0E-27
blast CAE57758 Hypothetical protein CBG00775 [Caenorhabditis briggsae] 4.0E-27
blast CAE57763 Hypothetical protein CBG00781 [Caenorhabditis briggsae] 4.0E-24
blast CAE57745 Hypothetical protein CBG00758 [Caenorhabditis briggsae] 7.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 1.1E-22
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 5.5E-24
Sequence
Target Sequence 
>C. ELEGANS:185657_AT
tgttcggatacctgctttttgccgctttattccttgcaactgctcaaggaaaagatgtag
ttgttgatctacgaaactgcacccgttcggaagcgatcaaggcagtcacttgccttaatg
tatactcccaagaaaccaaggaattcaaaaaatcgtgcgattcgttgcaatcctgtttcg
ctgacgtcacctgcaaatcattcgccgacgagcataaaaacatgatgcaagacgtgaaaa
aaatctgcaacgtgattgaatatatgacaggagacttccagccatgtgccaagaaattgg
aaaaagcaaagtctgtttgttttgcaaagtgggatccgaatgcagtggaggctactatta
aggcaaatgagacaccggcttgcgagaagttttatggagacaatggttgtcttaagaagg
agattgcagagcagtgcagtgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCGGATACCTGCTTTTTGCCGC 6 563 14 Antisense
TTTTGCCGCTTTATTCCTTGCAACT 627 675 30 Antisense
TCTACGAAACTGCACCCGTTCGGAA 156 609 81 Antisense
ACTGCACCCGTTCGGAAGCGATCAA 114 99 89 Antisense
GTCACTTGCCTTAATGTATACTCCC 431 465 118 Antisense
TTAATGTATACTCCCAAGAAACCAA 365 681 128 Antisense
CCTGCAAATCATTCGCCGACGAGCA 670 265 203 Antisense
ATGACAGGAGACTTCCAGCCATGTG 216 45 277 Antisense
GACTTCCAGCCATGTGCCAAGAAAT 641 371 286 Antisense
AAGTCTGTTTGTTTTGCAAAGTGGG 627 155 322 Antisense
GGAGATTGCAGAGCAGTGCAGTGAG 167 519 432 Antisense
Sequence Source Affymetrix Proprietary Database