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[185655_at]

Description Y73F8A.22 /REP_DB=WormBase Gene ID /WP=CE24656 /TR=Q9NA50 /GB=CAB60550.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 1.1
(-3)
A 		1.1
(-3)
A 		3.8
(-2.4)
A 		30.5
(3)
A 		29
B 3.6
(-2.4)
A 		23.6
(1.6)
A 		0.8
(-3)
A 		30.6
(3)
A 		30
C 1.1
(-3)
A 		3
(-2.6)
A 		1.8
(-2.9)
A 		31.2
(3)
A 		30
avr 1.9
(-3) 		9.2
(-1.5) 		2.1
(-3) 		30.8
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 3
(-2.5)
A 		1.2
(-3)
A 		5.1
(-2)
A 		3.6
(-2.4)
A 		24.5
(3)
A 		2.5
(-2.7)
A 		23
B 1.1
(-2.6)
A 		5.8
(2)
A 		6
(2.2)
A 		1.3
(-2.4)
A 		0.7
(-3)
A 		6.8
(3)
A 		6
C 2.5
(-2.1)
A 		12.9
(3)
A 		3.1
(-1.8)
A 		9.4
(1.3)
A 		1
(-2.8)
A 		0.6
(-3)
A 		12
avr 2.2
(-3) 		6.6
(1.1) 		4.7
(-0.7) 		4.8
(-0.6) 		8.7
(3) 		3.3
(-2) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.4
(-2.7)
A 		0.2
(-3)
A 		1
(-1.9)
A 		4.5
(3)
A 		4
B 1.1
(-2.1)
A 		5.8
(2.3)
A 		0.2
(-3)
A 		6.5
(3)
A 		6
C 0.4
(-3)
A 		0.9
(-2.4)
A 		0.6
(-2.8)
A 		5.3
(3)
A 		5
avr 0.6
(-3) 		2.3
(-0.9) 		0.6
(-3) 		5.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.6
(-2.8)
A 		0.4
(-3)
A 		1.1
(-2.4)
A 		0.9
(-2.6)
A 		7.4
(3)
A 		0.6
(-2.8)
A 		7
B 0.4
(-2.7)
A 		1.9
(1.4)
A 		1.5
(0.3)
A 		0.4
(-2.7)
A 		0.3
(-3)
A 		2.5
(3)
A 		2
C 0.9
(-1.9)
A 		3.9
(3)
A 		0.8
(-2)
A 		1.9
(-0.2)
A 		0.3
(-2.8)
A 		0.2
(-3)
A 		4
avr 0.6
(-3) 		2.1
(1.3) 		1.1
(-1.6) 		1.1
(-1.6) 		2.7
(3) 		1.1
(-1.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185655_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10261
Sequence Type Exemplar sequence
Representative Public ID Y73F8A.22 NCBI
Target Description Y73F8A.22 /REP_DB=WormBase Gene ID /WP=CE24656 /TR=Q9NA50 /GB=CAB60550.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070456(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070456 NCBI Caenorhabditis elegans Y73F8A.22 (Y73F8A.22) mRNA, complete cds. 11/11 A 
GENEFINDER00000030886 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15439152:15441370:-1 11/11 None
Y73F8A.22 ENSEMBL cdna:known chromosome:CEL140:IV:15439152:15441370:-1 gene:Y73F8A.22 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030825 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15439157-15441376(-) 100.0 100.0
chrIV:16900214-16902485(-) 96.41 96.41
Public Domain and Genome References
Gene Title
Ensembl Y73F8A.22
Entrez Gene 190682 Entrez gene
SwissProt Q9NA50 EMBL-EBI
WormBase CE24656 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60550 Hypothetical protein Y73F8A.22 [Caenorhabditis elegans] ref|NP_502857.1| Y73F8A.22 [Caenorhabditis elegans] 0.0
blast CAB55141 Hypothetical protein Y116A8C.1 [Caenorhabditis elegans] ref|NP_503002.1| Y116A8C.1 [Caenorhabditis elegans] 1.0E-149
blast CAB60551 Hypothetical protein Y73F8A.23 [Caenorhabditis elegans] ref|NP_502858.1| Y73F8A.23 [Caenorhabditis elegans] 7.0E-53
Sequence
Target Sequence 
>C. ELEGANS:185655_AT
caggaaggttgctctggaacttttcctagaccaatgttcgggcaaacgactgttacggaa
tcttttacatctgaaaaaatagtttataactacacgatttccgaaattgaaaacgacgat
cttacggaatggaaatttgattttaaatattttgttcaatgcgatgaagaatccttcgca
tcgattcgaggagatattgcggtttgcatttcgatccgcacattttccggaccattctgc
caaaatcgtgctgcaggagtagctttgtgtacagaaggaaacgggcttgtcattacaggc
gcctatgcgtacgcagaaggatacactattggagattatctaacaaagaaaagtaactcc
gcccttctgcctacacgatactctaatatgtacttttggatcgacggaatccgctcatca
agtgcccaatacaacatgtctgacccaactttaaatggtattacatgctttaattggggt
ccaaactctcaggagggagtgctcaatacgtgtgcatttatcgaaggaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGGAAGGTTGCTCTGGAACTTTTC 546 197 301 Antisense
GAAGGTTGCTCTGGAACTTTTCCTA 50 335 304 Antisense
GTTGCTCTGGAACTTTTCCTAGACC 205 439 308 Antisense
CTGGAACTTTTCCTAGACCAATGTT 322 239 314 Antisense
TTTCCTAGACCAATGTTCGGGCAAA 50 671 322 Antisense
TTTATAACTACACGATTTCCGAAAT 660 671 383 Antisense
AATCGTGCTGCAGGAGTAGCTTTGT 537 169 544 Antisense
GCAGGAGTAGCTTTGTGTACAGAAG 313 311 553 Antisense
GATACACTATTGGAGATTATCTAAC 621 423 620 Antisense
GAGGGAGTGCTCAATACGTGTGCAT 182 403 793 Antisense
ATACGTGTGCATTTATCGAAGGAAC 586 21 806 Antisense
Sequence Source Affymetrix Proprietary Database