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[185654_s_at]

Description R09F10.2 /REP_DB=WormBase Gene ID /WP=CE07436 /TR=Q27383 /GB=AAC69090.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 48      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 468
1 2 3 4 range
A 83.2
(-3)
A 		227.9
(-1.1)
P 		550.7
(3)
P 		176.9
(-1.8)
P 		468
B 88.4
(-3)
A 		321.7
(0.2)
P 		531.2
(3)
P 		164.9
(-2)
A 		443
C 86.3
(-3)
A 		318.5
(0.5)
P 		481.6
(3)
P 		201
(-1.3)
M 		395
avr 86
(-3) 		289.4
(-0.2) 		521.2
(3) 		180.9
(-1.7) 		435

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 464
1 2 3 4 5 6 range
A 94.1
(-3)
A 		184.2
(-1.6)
P 		115
(-2.7)
A 		119.3
(-2.6)
P 		392.8
(1.5)
P 		488.6
(3)
P 		395
B 80.4
(-3)
A 		184.5
(-1.6)
P 		194.4
(-1.5)
P 		227
(-1.1)
P 		341.7
(0.4)
P 		543
(3)
P 		463
C 78.9
(-3)
A 		172
(-1.7)
M 		166
(-1.8)
A 		240
(-0.8)
P 		437.4
(1.8)
P 		523.6
(3)
P 		445
avr 84.5
(-3) 		180.2
(-1.7) 		158.5
(-2) 		195.4
(-1.5) 		390.6
(1.2) 		518.4
(3) 		434
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 30.3
(-2.8)
A 		49.5
(-1.8)
P 		144
(3)
P 		25.9
(-3)
P 		118
B 28.2
(-3)
A 		79.5
(0.2)
P 		123.1
(3)
P 		35.1
(-2.6)
A 		95
C 28.6
(-3)
A 		91.6
(-0.3)
P 		167.9
(3)
P 		33.9
(-2.8)
M 		139
avr 29
(-3) 		73.5
(-0.7) 		145
(3) 		31.6
(-2.9) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 17.3
(-3)
A 		65.5
(-0.2)
P 		25.1
(-2.5)
A 		30.2
(-2.2)
P 		118.5
(3)
P 		119
(3)
P 		102
B 28
(-3)
A 		61.4
(-1.9)
P 		47.2
(-2.3)
P 		60.1
(-1.9)
P 		138.8
(0.8)
P 		202.5
(3)
P 		175
C 29.3
(-3)
A 		52.5
(-2)
M 		42.2
(-2.5)
A 		48.3
(-2.2)
P 		141.5
(1.6)
P 		175.3
(3)
P 		146
avr 24.9
(-3) 		59.8
(-1.5) 		38.2
(-2.4) 		46.2
(-2.1) 		132.9
(1.6) 		165.6
(3) 		141
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185654_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16122
Sequence Type Exemplar sequence
Representative Public ID R09F10.2 NCBI
Target Description R09F10.2 /REP_DB=WormBase Gene ID /WP=CE07436 /TR=Q27383 /GB=AAC69090.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077006(11), NM_077005(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077006 NCBI Caenorhabditis elegans Activated in Blocked Unfolded protein response family member (abu-9) (abu-9) mRNA, complete cds. 11/11 None
NM_077005 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-57) (pqn-57) mRNA, complete cds. 11/11 None
GENEFINDER00000002582 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8315461:8320837:-1 11/11 None
SNAP00000002573 ENSEMBL cdna:SNAP chromosome:CEL140:X:8319605:8320837:-1 11/11 None
SNAP00000002574 ENSEMBL cdna:SNAP chromosome:CEL140:X:8322048:8323280:1 11/11 None
GENEFINDER00000002581 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8322048:8323280:1 11/11 None
R09F10.7 ENSEMBL cdna:known chromosome:CEL140:X:8319605:8320837:-1 gene:R09F10.7 11/11 None
R09F10.2 ENSEMBL cdna:known chromosome:CEL140:X:8322048:8323280:1 gene:R09F10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8322046-8323279(+) 100.0 100.0
chrX:8319603-8320836(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Gene Symbol abu-9
pqn-57
Ensembl R09F10.7
R09F10.2
Entrez Gene 187749 Entrez gene
187751 Entrez gene
SwissProt Q27383 EMBL-EBI
WormBase CE07436 Wormbase
CE07436 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509405 Serpentine Receptor, class H family member (srh-11) [Caenorhabditis elegans] gb|AAC69095.1| Serpentine receptor, class h protein 11 [Caenorhabditis elegans] 1.0E-145
blast CAE74882 Hypothetical protein CBG22745 [Caenorhabditis briggsae] 1.0E-105
blast CAB01574 Hypothetical protein F55C5.9 [Caenorhabditis elegans] ref|NP_506084.2| Serpentine Receptor, class H family member (srh-16) [Caenorhabditis elegans] 3.0E-43
blast NP_509406 Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-57) [Caenorhabditis elegans] ref|NP_509407.1| Activated in Blocked Unfolded protein response family member (abu-9) [Caenorhabditis elegans] gb|AAC69096.1| Prion-like-(q/n-rich)-domain-bearing protein protein 57 [Caenorhabditis elegans] gb|AAC69090.1| Activated in blocked unfolded protein response protein 9 [Caenorhabditis elegans] 1.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR009475 EMBL-EBI Protein of unknown function DUF1096 2.0E-29
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.9E-4
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 8.1E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000002582 9 390-409,422-444,467-489,510-532,574-596,617-639,649-666,783-805,864-886
Sequence
Target Sequence 
>C. ELEGANS:185654_S_AT
actacttcggctccacaagtgattcatattcaacttgaaattcagcaagctcaagttcaa
tgccaacctgcttgccagcaacagtgccagtcatcttgcgtccagcaacaacaaccagct
aaacaatgtgcttcttcctgcaatactcaatgcacaaatgcttgccagcaaaccgctcaa
gctactcaacaagtcatttacggtcaaaactccaacactcaaatgtacgatccatacaac
aaccaacaacaacaacaagctaactgtgctccagcttgtcaaccagcctgtgacaactca
tgcatccagcaaactgccgctccaatctacaatccaaccacaacttcagctccacaagtg
gttcaaattgtgcttcaagcctctgttgctcaatcctcgcaatgtgctccacaatgtgaa
cagtcttgccaacaacaatgtgttcaacaacaacagccagtcgcacagtgccaatctgct
tgccaatcttcatgctcaagctcttgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTACTTCGGCTCCACAAGTGATTC 261 99 529 Antisense
CAAGTTCAATGCCAACCTGCTTGCC 80 185 580 Antisense
GCAACAGTGCCAGTCATCTTGCGTC 528 319 606 Antisense
TGTGCTTCTTCCTGCAATACTCAAT 350 557 655 Antisense
CAAATGCTTGCCAGCAAACCGCTCA 99 193 683 Antisense
TTACGGTCAAAACTCCAACACTCAA 198 655 726 Antisense
GCCTGTGACAACTCATGCATCCAGC 251 283 814 Antisense
CCACAACTTCAGCTCCACAAGTGGT 570 275 866 Antisense
AATTGTGCTTCAAGCCTCTGTTGCT 539 179 894 Antisense
GCCAGTCGCACAGTGCCAATCTGCT 174 281 984 Antisense
CAATCTTCATGCTCAAGCTCTTGCC 528 181 1012 Antisense
Sequence Source Affymetrix Proprietary Database