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[185653_at]

Description C37H5.11 /REP_DB=WormBase Gene ID /WP=CE08634 /TR=P91139 /GB=AAB42374.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 30      6grp_cgc > 81      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 51.5
(3)
A 		11.6
(-2.2)
A 		5.3
(-3)
A 		13.4
(-1.9)
A 		46
B 33.7
(2.5)
A 		17
(-0.6)
A 		4.2
(-3)
A 		36.4
(3)
A 		32
C 32.3
(-3)
A 		34.3
(1.8)
A 		34.8
(3)
A 		32.3
(-3)
A 		3
avr 39.2
(3) 		21
(-1.5) 		14.8
(-3) 		27.4
(0.1) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 9.7
(-2)
A 		51.9
(3)
A 		2.6
(-2.8)
A 		4.5
(-2.6)
A 		1.8
(-2.9)
A 		1.1
(-3)
A 		51
B 23.7
(-1.9)
A 		33.6
(-0.9)
A 		72.3
(3)
A 		25.4
(-1.8)
A 		27.3
(-1.6)
A 		13.1
(-3)
A 		59
C 38.9
(-0)
A 		34.6
(-0.5)
A 		65.2
(3)
A 		13
(-3)
A 		15.2
(-2.7)
A 		14.6
(-2.8)
A 		52
avr 24.1
(-0.7) 		40
(1.9) 		46.7
(3) 		14.3
(-2.2) 		14.8
(-2.2) 		9.6
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 18.8
(3)
A 		2.5
(-2.6)
A 		1.4
(-3)
A 		2
(-2.8)
A 		17
B 10.7
(3)
A 		4.2
(-1)
A 		1
(-3)
A 		7.8
(1.2)
A 		10
C 10.7
(1.7)
A 		9.9
(1)
A 		12.1
(3)
A 		5.4
(-3)
A 		7
avr 13.4
(3) 		5.5
(-2.5) 		4.8
(-3) 		5.1
(-2.8) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.8
(-2.5)
A 		18.5
(3)
A 		0.6
(-2.9)
A 		1.1
(-2.7)
A 		0.5
(-2.9)
A 		0.3
(-3)
A 		18
B 8.2
(-1.4)
A 		11.2
(-0)
A 		17.6
(3)
A 		6.7
(-2.1)
A 		11.1
(-0.1)
A 		4.9
(-3)
A 		13
C 14.4
(2.1)
A 		10.6
(0.4)
A 		16.6
(3)
A 		2.6
(-3)
A 		4.9
(-2)
A 		4.9
(-2)
A 		14
avr 8.1
(-0.2) 		13.4
(3) 		11.6
(1.9) 		3.5
(-2.9) 		5.5
(-1.7) 		3.4
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185653_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15479
Sequence Type Exemplar sequence
Representative Public ID C37H5.11 NCBI
Target Description C37H5.11 /REP_DB=WormBase Gene ID /WP=CE08634 /TR=P91139 /GB=AAB42374.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071894(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071894 NCBI Caenorhabditis elegans Coexpressed With Polycystins family member (cwp-2) (cwp-2) mRNA, complete cds. 11/11 None
SNAP00000016587 ENSEMBL cdna:SNAP chromosome:CEL140:V:4841798:4842381:-1 11/11 None
GENEFINDER00000016593 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4841798:4842381:-1 11/11 None
C37H5.11 ENSEMBL cdna:known chromosome:CEL140:V:4841798:4842381:-1 gene:C37H5.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4841797-4842381(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cwp-2
Ensembl C37H5.11
Entrez Gene 183297 Entrez gene
SwissProt P91139 EMBL-EBI
WormBase CE08634 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42374 Coexpressed with polycystins protein 2 [Caenorhabditis elegans] ref|NP_504295.1| Coexpressed With Polycystins family member (cwp-2) [Caenorhabditis elegans] 7.0E-57
blast AAB42373 Coexpressed with polycystins protein 1 [Caenorhabditis elegans] ref|NP_504294.1| Coexpressed With Polycystins family member (cwp-1) [Caenorhabditis elegans] 3.0E-47
Sequence
Target Sequence 
>C. ELEGANS:185653_AT
tgcgctgctgttggcgccaattacatagaatccgctattttcaaattcgatgacagttgc
gaaccacttgaagaaccacgcaagccagaagtcgcaaaatgctatgagccttccactagt
ttgccaaaaactctcgaggaatatcgtgcaatgggatacgactggggagagtttgtgcat
gacgacaaagcggatcaagctccagaaggactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGCTGCTGTTGGCGCCAATTACA 254 583 52 Antisense
GGCGCCAATTACATAGAATCCGCTA 376 543 64 Antisense
CGATGACAGTTGCGAACCACTTGAA 567 247 99 Antisense
AGTTGCGAACCACTTGAAGAACCAC 398 63 106 Antisense
GAACCACGCAAGCCAGAAGTCGCAA 372 345 124 Antisense
TCGCAAAATGCTATGAGCCTTCCAC 303 601 143 Antisense
TGCTATGAGCCTTCCACTAGTTTGC 223 579 151 Antisense
ACTAGTTTGCCAAAAACTCTCGAGG 263 97 166 Antisense
AACTCTCGAGGAATATCGTGCAATG 372 141 180 Antisense
TGCATGACGACAAAGCGGATCAAGC 299 577 227 Antisense
AGCGGATCAAGCTCCAGAAGGACTT 590 81 240 Antisense
Sequence Source Affymetrix Proprietary Database