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[185651_at]

Description T24A6.13 /REP_DB=WormBase Gene ID /WP=CE14148 /TR=O61944 /GB=AAC17800.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 13      6grp_total > 42      4grp_total > 18      6grp_cgc > 81      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 32
(-2)
A 		33.6
(-1.9)
A 		18.2
(-3)
A 		104.2
(3)
P 		86
B 24.5
(-3)
A 		71.2
(3)
P 		34.7
(-1.7)
A 		39.1
(-1.1)
A 		47
C 61.7
(-2.6)
P 		57
(-3)
P 		59.1
(-2.8)
P 		125.1
(3)
P 		68
avr 39.4
(-2.8) 		53.9
(-1.1) 		37.3
(-3) 		89.5
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 56.1
(2.9)
P 		20.5
(-2.3)
A 		56.5
(3)
P 		15.5
(-3)
A 		42.1
(0.9)
P 		51.2
(2.2)
A 		41
B 61.7
(2.1)
P 		41.7
(0.3)
A 		62.5
(2.1)
P 		72.2
(3)
A 		21.9
(-1.5)
P 		4.5
(-3)
A 		68
C 20.5
(-3)
M 		60.2
(2.9)
M 		61.1
(3)
A 		56.8
(2.4)
A 		33.9
(-1)
P 		28.4
(-1.8)
A 		41
avr 46.1
(0.4) 		40.8
(-0.6) 		60
(3) 		48.2
(0.8) 		32.6
(-2.1) 		28
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 11.7
(0.9)
A 		7.3
(-1.6)
A 		4.8
(-3)
A 		15.3
(3)
P 		11
B 7.8
(-3)
A 		17.6
(3)
P 		8
(-2.9)
A 		8.3
(-2.7)
A 		10
C 20.4
(2.1)
P 		16.4
(-3)
P 		20.6
(2.4)
P 		21.1
(3)
P 		5
avr 13.3
(0.5) 		13.8
(1.3) 		11.1
(-3) 		14.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 10.3
(1.4)
P 		7.3
(-0.7)
A 		12.3
(2.7)
P 		3.9
(-3)
A 		12.7
(3)
P 		12.5
(2.9)
A 		9
B 21.5
(3)
P 		13.9
(0.7)
A 		15.2
(1.1)
P 		19.1
(2.3)
A 		8.9
(-0.8)
P 		1.7
(-3)
A 		20
C 7.6
(-3)
M 		18.4
(3)
M 		15.6
(1.4)
A 		11.4
(-0.9)
A 		11
(-1.1)
P 		9.5
(-1.9)
A 		11
avr 13.1
(1.8) 		13.2
(1.9) 		14.4
(3) 		11.5
(0.3) 		10.9
(-0.2) 		7.9
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185651_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15146
Sequence Type Exemplar sequence
Representative Public ID T24A6.13 NCBI
Target Description T24A6.13 /REP_DB=WormBase Gene ID /WP=CE14148 /TR=O61944 /GB=AAC17800.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071591(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071591 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-68) (srbc-68) mRNA, complete cds. 11/11 None
GENEFINDER00000027443 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3545503:3548724:-1 11/11 None
T24A6.13 ENSEMBL cdna:known chromosome:CEL140:V:3545503:3546443:-1 gene:T24A6.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3545502-3546443(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-68
Ensembl T24A6.13
Entrez Gene 188830 Entrez gene
SwissProt O61944 EMBL-EBI
WormBase CE14148 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17801 Serpentine receptor, class w protein 130 [Caenorhabditis elegans] ref|NP_503993.1| Serpentine Receptor, class W family member (srw-130) [Caenorhabditis elegans] 0.0
blast AAC17800 Serpentine receptor, class bc (class b-like) protein 68 [Caenorhabditis elegans] ref|NP_503992.1| Serpentine Receptor, class BC (class B-like) family member (srbc-68) [Caenorhabditis elegans] 1.0E-127
blast AAG24158 Serpentine receptor, class w protein 137 [Caenorhabditis elegans] ref|NP_503799.2| Serpentine Receptor, class W family member (srw-137) [Caenorhabditis elegans] 1.0E-73
blast AAC17797 Serpentine receptor, class bc (class b-like) protein 67 [Caenorhabditis elegans] ref|NP_503989.1| Serpentine Receptor, class BC (class B-like) family member (srbc-67) [Caenorhabditis elegans] 1.0E-69
blast E89004 protein T24A6.12 [imported] - Caenorhabditis elegans 4.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.1E-99
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.1E-99
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503992.1 7 10-32,53-75,80-102,123-145,178-200,220-237,247-269
T24A6.13 7 10-32,53-75,80-102,123-145,178-200,220-237,247-269
GENEFINDER00000027443 14 39-61,71-90,162-184,227-249,271-293,308-330,337-356,376-398,419-441,446-468,489-511,544-566,586-603,613-635
Sequence
Target Sequence 
>C. ELEGANS:185651_AT
atcgagtcatttctctattcttccctttcttctattgcgcaaaccgtagcaaacttccac
tatttgccatttttattctaattttttccttgataattttcgatcaaattatcatgttcg
gatattgtgggaatactattgatactcccatgaactgcgaccatttccgttgttctttca
atgagtgctacagtatttattgggtagagcacgaaaaaattgtattcagtatgatcgtcg
ttttgacagtattgcaattagggaaacttgttgtttacactgttcttgcacagaaccaat
cggctcaagtttattcaagagctacccaaatagctatgcttgactcaacaactcttattt
tattcaatcttgttccggtcatgtctactttttggtttgaatcagctgattatgaaacgt
attcgtcgtttgcaactctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGAGTCATTTCTCTATTCTTCCC 5 37 326 Antisense
CCTTTCTTCTATTGCGCAAACCGTA 155 269 349 Antisense
GCAAACCGTAGCAAACTTCCACTAT 579 317 364 Antisense
AACTTCCACTATTTGCCATTTTTAT 385 139 377 Antisense
TATTGATACTCCCATGAACTGCGAC 136 665 462 Antisense
TGAACTGCGACCATTTCCGTTGTTC 200 573 476 Antisense
TTGTTGTTTACACTGTTCTTGCACA 214 707 593 Antisense
TCTTGCACAGAACCAATCGGCTCAA 560 617 609 Antisense
AGCTATGCTTGACTCAACAACTCTT 548 79 657 Antisense
TTCAATCTTGTTCCGGTCATGTCTA 494 683 688 Antisense
ACGTATTCGTCGTTTGCAACTCTCT 342 91 742 Antisense
Sequence Source Affymetrix Proprietary Database