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[185650_at]

Description Y75B8A.34 /REP_DB=WormBase Gene ID /WP=CE23045 /TR=Q9XW59 /GB=CAA22112.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 0      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 25.4
(-2.2)
A 		17.8
(-3)
A 		50.5
(0.3)
P 		77.2
(3)
A 		59
B 50.2
(2.4)
A 		26.7
(-2.2)
A 		53.4
(3)
A 		22.7
(-3)
M 		31
C 41.2
(-1.1)
P 		50.1
(0.4)
A 		30
(-3)
A 		65.5
(3)
P 		36
avr 38.9
(-1.1) 		31.5
(-3) 		44.6
(0.3) 		55.1
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 58.8
(3)
A 		14
(-2.1)
A 		54.3
(2.5)
A 		5.6
(-3)
A 		38.9
(0.8)
A 		30.9
(-0.1)
A 		53
B 37.3
(1.1)
P 		42.6
(1.8)
A 		38.1
(1.2)
P 		6
(-3)
A 		10.4
(-2.4)
A 		51.8
(3)
A 		46
C 26.2
(-0.2)
P 		50.6
(2.7)
A 		17.6
(-1.2)
A 		53
(3)
A 		2.8
(-3)
A 		35.1
(0.9)
P 		50
avr 40.8
(3) 		35.7
(1.7) 		36.7
(1.9) 		21.5
(-1.9) 		17.4
(-3) 		39.3
(2.6) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 9.2
(0.4)
A 		3.9
(-3)
A 		13.2
(3)
P 		11.3
(1.8)
A 		9
B 16
(3)
A 		6.6
(-2)
A 		12.4
(1.1)
A 		4.8
(-3)
M 		11
C 13.6
(1.8)
P 		14.4
(3)
A 		10.4
(-3)
A 		11
(-2.1)
P 		4
avr 12.9
(3) 		8.3
(-3) 		12
(1.8) 		9
(-2.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 10.8
(2.4)
A 		5
(-0.9)
A 		11.8
(3)
A 		1.4
(-3)
A 		11.7
(2.9)
A 		7.5
(0.5)
A 		10
B 13
(0.9)
P 		14.2
(1.3)
A 		9.3
(-0.4)
P 		1.6
(-3)
A 		4.2
(-2.1)
A 		19.3
(3)
A 		18
C 9.7
(0.6)
P 		15.4
(3)
A 		4.5
(-1.5)
A 		10.7
(1.1)
A 		0.9
(-3)
A 		11.8
(1.5)
P 		15
avr 11.2
(1.8) 		11.5
(2) 		8.5
(-0.2) 		4.6
(-3) 		5.6
(-2.3) 		12.9
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185650_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7900
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.34 NCBI
Target Description Y75B8A.34 /REP_DB=WormBase Gene ID /WP=CE23045 /TR=Q9XW59 /GB=CAA22112.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067205(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067205 NCBI Caenorhabditis elegans Y75B8A.34 (Y75B8A.34) mRNA, complete cds. 11/11 None
SNAP00000020101 ENSEMBL cdna:SNAP chromosome:CEL140:III:12359865:12364995:1 10/11 None
GENEFINDER00000020163 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12359931:12361733:1 11/11 None
Y75B8A.34 ENSEMBL cdna:known chromosome:CEL140:III:12359440:12361123:1 gene:Y75B8A.34 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12359435-12361119(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B8A.34
Entrez Gene 190714 Entrez gene
SwissProt Q9XW59 EMBL-EBI
WormBase CE23045 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22112 Hypothetical protein Y75B8A.34 [Caenorhabditis elegans] ref|NP_499606.1| Y75B8A.34 [Caenorhabditis elegans] 1.0E-171
blast CAA22112 Hypothetical protein Y75B8A.34 [Caenorhabditis elegans] ref|NP_499606.1| Y75B8A.34 [Caenorhabditis elegans] 1.0E-132
blast CAA22112 Hypothetical protein Y75B8A.34 [Caenorhabditis elegans] ref|NP_499606.1| Y75B8A.34 [Caenorhabditis elegans] 1.0E-120
blast NP_504960 C50E3.7 [Caenorhabditis elegans] gb|AAB04882.1| Hypothetical protein C50E3.7 [Caenorhabditis elegans] 1.0E-49
blast NP_504960 C50E3.7 [Caenorhabditis elegans] gb|AAB04882.1| Hypothetical protein C50E3.7 [Caenorhabditis elegans] 1.0E-45
blast NP_504960 C50E3.7 [Caenorhabditis elegans] gb|AAB04882.1| Hypothetical protein C50E3.7 [Caenorhabditis elegans] 1.0E-36
blast CAE65505 Hypothetical protein CBG10475 [Caenorhabditis briggsae] 4.0E-34
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499606.1 7 48-70,77-99,119-141,161-183,212-234,255-273,288-310
Y75B8A.34 7 48-70,77-99,119-141,161-183,212-234,255-273,288-310
SNAP00000020101 5 12-34,54-76,97-119,148-170,194-216
GENEFINDER00000020163 6 13-32,55-72,84-106,135-157,178-196,211-233
Sequence
Target Sequence 
>C. ELEGANS:185650_AT
acattccttatgtcactaaaccgatgtctaagttttggggcaaagcctttaaactccaga
attttcgatggggcgaatgtagttgctccggttcttctagcactttccagctctatatca
tgtgcagttatatgcatcaggtcttcttcaattgaaagacacttccttcccactacagga
tttattaacattgagacaaagttgaattgggtttccttgtttataaaccgaatgttcttc
attttcccactcgcctctattgcatgctacattgttttattttacgttctacggagccaa
aacaagcaggctttcaccaaatccaaaagccggaatcaaggagagcaaaaggtatttgtg
cagctcttgataactgccatactgtatggggtaactcaaatattctatgaagccattgca
ttctttcttataactgaaacttcacttaagctattccttatttccatattcaatgtatta
aattatcttcctgaaatatctctgcccctgtcagtgattgccagcaaaattcgacttggc
gaaaaacgaatcgcacgtgttgctccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATTCCTTATGTCACTAAACCGAT 181 105 424 Antisense
GGGCAAAGCCTTTAAACTCCAGAAT 444 493 461 Antisense
CTTCTAGCACTTTCCAGCTCTATAT 357 221 517 Antisense
ATATGCATCAGGTCTTCTTCAATTG 182 19 553 Antisense
ACTTCCTTCCCACTACAGGATTTAT 495 101 584 Antisense
TCGCCTCTATTGCATGCTACATTGT 588 599 674 Antisense
AGCTCTTGATAACTGCCATACTGTA 68 81 785 Antisense
AGCCATTGCATTCTTTCTTATAACT 177 83 834 Antisense
AAGCTATTCCTTATTTCCATATTCA 354 151 871 Antisense
TTATCTTCCTGAAATATCTCTGCCC 275 679 906 Antisense
AAACGAATCGCACGTGTTGCTCCAA 322 127 967 Antisense
Sequence Source Affymetrix Proprietary Database