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[185649_at]

Description K02E10.6 /REP_DB=WormBase Gene ID /WP=CE04698 /TR=Q21133 /GB=AAC47072.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 14      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 54.2
(3)
A 		39.6
(-3)
A 		41.4
(-2.3)
A 		47.2
(0.1)
A 		15
B 71.8
(2)
P 		42.4
(-3)
A 		52.7
(-1.2)
A 		77.6
(3)
P 		35
C 98.8
(0.7)
A 		85
(-0.5)
A 		56.9
(-3)
A 		124.1
(3)
P 		67
avr 74.9
(1.5) 		55.7
(-2) 		50.3
(-3) 		83
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 158.7
(3)
P 		78.5
(-2.2)
A 		91.2
(-1.4)
A 		67
(-3)
M 		75.8
(-2.4)
A 		115.8
(0.2)
A 		92
B 149.4
(3)
P 		76.6
(-1.3)
A 		48.3
(-3)
A 		99.3
(0)
P 		92.9
(-0.4)
P 		143.5
(2.6)
P 		101
C 127.9
(1.3)
P 		74
(-2.4)
P 		85.8
(-1.6)
A 		66.1
(-3)
A 		96.9
(-0.8)
P 		151.4
(3)
P 		85
avr 145.3
(3) 		76.4
(-2.9) 		75.1
(-3) 		77.5
(-2.8) 		88.5
(-1.9) 		136.9
(2.3) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 19.7
(3)
A 		8.6
(-2.2)
A 		10.8
(-1.2)
A 		6.9
(-3)
A 		13
B 22.9
(3)
P 		10.5
(-3)
A 		12.2
(-2.2)
A 		16.5
(-0.1)
P 		12
C 32.7
(3)
A 		24.4
(-0.9)
A 		19.8
(-3)
A 		20.9
(-2.5)
P 		13
avr 25.1
(3) 		14.5
(-2.9) 		14.3
(-3) 		14.8
(-2.7) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 29.3
(3)
P 		27.9
(2.3)
A 		19.9
(-1.6)
A 		17
(-3)
M 		22.9
(-0.1)
A 		28.2
(2.5)
A 		12
B 52
(2.8)
P 		25.5
(-1)
A 		11.7
(-3)
A 		26.3
(-0.9)
P 		37.8
(0.7)
P 		53.5
(3)
P 		42
C 47.4
(2.5)
P 		22.6
(-1.5)
P 		21.8
(-1.6)
A 		13.3
(-3)
A 		31.3
(-0.1)
P 		50.7
(3)
P 		37
avr 42.9
(2.7) 		25.3
(-1.3) 		17.8
(-3) 		18.9
(-2.7) 		30.7
(-0.1) 		44.1
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185649_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18328
Sequence Type Exemplar sequence
Representative Public ID K02E10.6 NCBI
Target Description K02E10.6 /REP_DB=WormBase Gene ID /WP=CE04698 /TR=Q21133 /GB=AAC47072.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076050(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076050 NCBI Caenorhabditis elegans K02E10.6 (K02E10.6) mRNA, complete cds. 10/11 None
SNAP00000017096 ENSEMBL cdna:SNAP chromosome:CEL140:X:2480762:2482826:-1 10/11 None
GENEFINDER00000017104 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2480762:2482826:-1 10/11 None
K02E10.6 ENSEMBL cdna:known chromosome:CEL140:X:2480762:2482904:-1 gene:K02E10.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2480761-2482931(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02E10.6
Entrez Gene 186891 Entrez gene
SwissProt Q21133 EMBL-EBI
WormBase CE31193 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47072 Hypothetical protein K02E10.6 [Caenorhabditis elegans] ref|NP_508451.2| K02E10.6 [Caenorhabditis elegans] 3.0E-86
blast AAC47072 Hypothetical protein K02E10.6 [Caenorhabditis elegans] ref|NP_508451.2| K02E10.6 [Caenorhabditis elegans] 4.0E-86
blast CAE58870 Hypothetical protein CBG02100 [Caenorhabditis briggsae] 3.0E-63
blast CAE58870 Hypothetical protein CBG02100 [Caenorhabditis briggsae] 4.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 4.2E-28
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 4.2E-28
Sequence
Target Sequence 
>C. ELEGANS:185649_AT
tcatatttctcataccctaaccataatttccggacgcaacaaactatataccttgagctt
gaatgcaggttacgccactgatggcgatcctgcaataaacgatgaagtctaccgaatctt
catgctcaccattctcgacggcttcaacatcttcaaaatcaaaatgtacaatgaccgttc
gttcatctatttgactcgccgaaattattggttaggcgatcgttattattatatggacaa
ttattattaccttgccacgcgggatacgtgcgcataccgtatgaatgagaccgaacgaca
acatcttttctacgaagaggacaacatgccgatattcgatatcatttatcagtgccaacg
atatcaagagtactgctgtggcctgaattgctgcaaaattgatcaaatcgggcgtcatga
cgagccaccgaaacccccaaagtacccttggcaagatccatggcgtcataactctgcatc
atc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATATTTCTCATACCCTAACCATA 49 621 18 Antisense
GAATGCAGGTTACGCCACTGATGGC 582 331 78 Antisense
GAAGTCTACCGAATCTTCATGCTCA 99 337 121 Antisense
GACCGTTCGTTCATCTATTTGACTC 486 381 190 Antisense
TTGCCACGCGGGATACGTGCGCATA 191 701 269 Antisense
GACCGAACGACAACATCTTTTCTAC 7 383 306 Antisense
AGAGGACAACATGCCGATATTCGAT 406 67 333 Antisense
GTACTGCTGTGGCCTGAATTGCTGC 404 459 387 Antisense
AAATCGGGCGTCATGACGAGCCACC 618 117 422 Antisense
TACCCTTGGCAAGATCCATGGCGTC 346 629 460 Antisense
CATGGCGTCATAACTCTGCATCATC 456 209 476 Antisense
Sequence Source Affymetrix Proprietary Database