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[185648_at]

Description H35N09.1 /REP_DB=WormBase Gene ID /WP=CE19943 /TR=Q9TZM6 /GB=AAC67407.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 328
1 2 3 4 range
A 479.5
(3)
P 		300.9
(-0.4)
A 		163.5
(-3)
A 		377.7
(1.1)
P 		316
B 401
(3)
P 		309.4
(0.8)
M 		151.8
(-3)
A 		208.3
(-1.6)
P 		249
C 468.5
(3)
P 		350.4
(0.7)
A 		200.4
(-2.3)
A 		163
(-3)
P 		306
avr 449.7
(3) 		320.2
(0.2) 		171.9
(-3) 		249.7
(-1.3) 		278

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 221
1 2 3 4 5 6 range
A 218.9
(1.6)
P 		209.4
(1)
M 		241.4
(3)
M 		206
(0.8)
P 		145.8
(-3)
A 		149.1
(-2.8)
A 		96
B 249.3
(1.8)
P 		235.2
(1.3)
P 		281.9
(3)
P 		160.5
(-1.5)
A 		174
(-1)
P 		119.7
(-3)
A 		162
C 322.6
(3)
P 		222.3
(0.3)
P 		244.1
(0.9)
A 		154.9
(-1.6)
A 		169.2
(-1.2)
A 		101.5
(-3)
A 		221
avr 263.6
(3) 		222.3
(1.2) 		255.8
(2.7) 		173.8
(-0.8) 		163
(-1.3) 		123.4
(-3) 		140
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 174.6
(3)
P 		65.3
(-2)
A 		42.8
(-3)
A 		55.3
(-2.4)
P 		132
B 127.9
(3)
P 		76.4
(-0.3)
M 		35.2
(-3)
A 		44.4
(-2.4)
P 		93
C 155.1
(3)
P 		100.7
(0.4)
A 		69.9
(-1)
A 		27.5
(-3)
P 		128
avr 152.5
(3) 		80.8
(-0.9) 		49.3
(-2.6) 		42.4
(-3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 40.3
(-2.4)
P 		74.5
(3)
M 		52.6
(-0.4)
M 		52.2
(-0.5)
P 		44
(-1.8)
A 		36.3
(-3)
A 		38
B 86.7
(3)
P 		78.3
(1.9)
P 		68.4
(0.5)
P 		42.5
(-3)
A 		70.7
(0.8)
P 		44.6
(-2.7)
A 		44
C 119.6
(3)
P 		67.8
(-0.5)
P 		62.1
(-0.9)
A 		31.2
(-3)
A 		54.8
(-1.4)
A 		34
(-2.8)
A 		88
avr 82.2
(3) 		73.5
(1.8) 		61
(0.1) 		42
(-2.5) 		56.5
(-0.5) 		38.3
(-3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185648_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17188
Sequence Type Exemplar sequence
Representative Public ID H35N09.1 NCBI
Target Description H35N09.1 /REP_DB=WormBase Gene ID /WP=CE19943 /TR=Q9TZM6 /GB=AAC67407.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077059(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077059 NCBI Caenorhabditis elegans H35N09.1 (H35N09.1) mRNA, complete cds. 11/11 None
SNAP00000029007 ENSEMBL cdna:SNAP chromosome:CEL140:X:8607114:8607514:1 11/11 None
GENEFINDER00000029009 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8607114:8607514:1 11/11 None
H35N09.1 ENSEMBL cdna:known chromosome:CEL140:X:8607111:8607607:1 gene:H35N09.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8607112-8607513(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H35N09.1
Entrez Gene 181114 Entrez gene
SwissProt Q9TZM6 EMBL-EBI
WormBase CE19943 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67407 Hypothetical protein H35N09.1 [Caenorhabditis elegans] ref|NP_509460.1| H35N09.1 [Caenorhabditis elegans] 2.0E-66
Sequence
Target Sequence 
>C. ELEGANS:185648_AT
ttgtctccctctcatttggactaaactgccatgtcggagatgaagccaccacgaccatcc
ttggaggattcgactactgctatgtcgggactgaacataagactagagaaaaagtctatg
gaggatcgactggatcatttgatatgaatgagggaaattgcatgtatagcattaacactg
atactggaaacgagtatatcaactgttactgcgactacgagacctgcaactcgccaccag
accgcaccaagccactgtccggacttgcaaagttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTCTCCCTCTCATTTGGACTAAA 566 707 53 Antisense
GGACTAAACTGCCATGTCGGAGATG 273 525 70 Antisense
GTCGGAGATGAAGCCACCACGACCA 30 471 85 Antisense
CACCACGACCATCCTTGGAGGATTC 193 201 99 Antisense
TCCTTGGAGGATTCGACTACTGCTA 707 589 110 Antisense
GACTACTGCTATGTCGGGACTGAAC 511 373 124 Antisense
GGAGGATCGACTGGATCATTTGATA 632 515 172 Antisense
GCATTAACACTGATACTGGAAACGA 152 213 221 Antisense
ATATCAACTGTTACTGCGACTACGA 503 19 248 Antisense
TGCGACTACGAGACCTGCAACTCGC 404 579 262 Antisense
GCCACTGTCCGGACTTGCAAAGTTT 544 279 303 Antisense
Sequence Source Affymetrix Proprietary Database