[Home] | [Total List]

[185647_at]

Description Y81B9A.3 /REP_DB=WormBase Gene ID /WP=CE24680 /TR=Q9N4P8 /GB=AAF60883.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 309
1 2 3 4 range
A 5
(-2.9)
A 		7
(-2.9)
A 		2.4
(-3)
A 		311.7
(3)
P 		309
B 20.6
(-2.5)
A 		3.7
(-3)
A 		6.3
(-2.9)
A 		227.6
(3)
P 		224
C 25.7
(-2.6)
A 		6.9
(-3)
A 		13.7
(-2.9)
A 		289.4
(3)
P 		283
avr 17.1
(-2.8) 		5.9
(-3) 		7.5
(-3) 		276.2
(3) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 17.8
(-0.5)
A 		1.9
(-3)
A 		39.8
(3)
A 		3.1
(-2.8)
A 		19.2
(-0.3)
A 		2.3
(-2.9)
A 		38
B 8.3
(-1.4)
A 		22.9
(3)
A 		11.8
(-0.3)
A 		4.3
(-2.6)
A 		2.9
(-3)
A 		18.2
(1.6)
A 		20
C 2
(-2.9)
A 		37.2
(3)
A 		2.8
(-2.8)
A 		1.4
(-3)
A 		11.3
(-1.3)
A 		1.9
(-2.9)
A 		36
avr 9.4
(-0.8) 		20.7
(3) 		18.1
(2.1) 		2.9
(-3) 		11.1
(-0.2) 		7.5
(-1.4) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 1.8
(-2.8)
A 		1.5
(-2.9)
A 		0.6
(-3)
A 		45.6
(3)
P 		45
B 6.6
(-2.3)
A 		0.9
(-3)
A 		1.5
(-2.9)
A 		48.5
(3)
P 		48
C 8.5
(-2.2)
A 		2
(-3)
A 		4.8
(-2.6)
A 		48.8
(3)
P 		47
avr 5.6
(-2.5) 		1.5
(-3) 		2.3
(-2.9) 		47.6
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.3
(-1)
A 		0.7
(-2.9)
A 		8.7
(3)
A 		0.8
(-2.9)
A 		5.8
(0.9)
A 		0.6
(-3)
A 		8
B 2.9
(-1.3)
A 		7.6
(3)
A 		2.9
(-1.3)
A 		1.1
(-3)
A 		1.2
(-2.9)
A 		6.8
(2.3)
A 		7
C 0.7
(-2.8)
A 		11.3
(3)
A 		0.7
(-2.8)
A 		0.3
(-3)
A 		3.7
(-1.1)
A 		0.6
(-2.8)
A 		11
avr 2.3
(-1.3) 		6.5
(3) 		4.1
(0.5) 		0.7
(-3) 		3.6
(0) 		2.7
(-0.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185647_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16123
Sequence Type Exemplar sequence
Representative Public ID Y81B9A.3 NCBI
Target Description Y81B9A.3 /REP_DB=WormBase Gene ID /WP=CE24680 /TR=Q9N4P8 /GB=AAF60883.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077148(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077148 NCBI Caenorhabditis elegans Y81B9A.3 (Y81B9A.3) mRNA, complete cds. 11/11 None
Y81B9A.3 ENSEMBL cdna:known chromosome:CEL140:X:9182607:9182975:1 gene:Y81B9A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033312 5/11 Cross Hyb Matching Probes None
GENEFINDER00000033317 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9182605-9182913(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y81B9A.3
Entrez Gene 190746 Entrez gene
SwissProt Q9N4P8 EMBL-EBI
WormBase CE24680 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60883 Hypothetical protein Y81B9A.3 [Caenorhabditis elegans] ref|NP_509549.1| Y81B9A.3 [Caenorhabditis elegans] 7.0E-47
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509549.1 2 10-32,39-61
Y81B9A.3 2 10-32,39-61
Sequence
Target Sequence 
>C. ELEGANS:185647_AT
gtttggacacggagtttggccacttctcgcttgctcattttttgctcatggtggttatgc
tcgagatcggatgtcacccatactgcctggaagaccaagtgaagctcggtaacttgtgca
acataatgctgcagctccttcaaattgtgcaaattggaatgaatatgttaattacaaata
ataatttcgtttattatctttattttggagtgcgtgttttcatagaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGGACACGGAGTTTGGCCACTT 195 447 20 Antisense
TGCTCATTTTTTGCTCATGGTGGTT 230 579 51 Antisense
ATGGTGGTTATGCTCGAGATCGGAT 120 51 67 Antisense
TCGAGATCGGATGTCACCCATACTG 45 601 80 Antisense
TCACCCATACTGCCTGGAAGACCAA 314 627 93 Antisense
GGAAGACCAAGTGAAGCTCGGTAAC 295 531 108 Antisense
GAAGCTCGGTAACTTGTGCAACATA 264 343 120 Antisense
GCAACATAATGCTGCAGCTCCTTCA 115 319 137 Antisense
GCTGCAGCTCCTTCAAATTGTGCAA 109 297 147 Antisense
ATTATCTTTATTTTGGAGTGCGTGT 440 13 212 Antisense
TTGGAGTGCGTGTTTTCATAGAAGC 642 707 224 Antisense
Sequence Source Affymetrix Proprietary Database