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[185645_s_at]

Description F15B10.1 /REP_DB=WormBase Gene ID /WP=CE16987 /TR=O44166 /GB=AAB88349.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 56      4grp_highest_8_8 > 29      4grp_high_8_8 > 03      6grp_highest_nonorm > 68      6grp_total > 56      4grp_total > 06      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 808
1 2 3 4 range
A 2910.3
(-0.7)
P 		2666.9
(-3)
P 		3164.2
(1.7)
P 		3302.1
(3)
P 		635
B 2987.1
(3)
P 		2828.7
(1.1)
P 		2494.6
(-3)
P 		2802.9
(0.8)
P 		493
C 2839.6
(-1.4)
P 		2718.9
(-3)
P 		2916.3
(-0.4)
P 		3176.9
(3)
P 		458
avr 2912.3
(-0.1) 		2738.2
(-3) 		2858.4
(-1) 		3094
(3) 		356

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1563
1 2 3 4 5 6 range
A 2289.8
(-0.4)
P 		2072.6
(-1.5)
P 		1999.6
(-1.9)
P 		1784.3
(-2.9)
P 		1771.9
(-3)
P 		2964.8
(3)
P 		1193
B 2009.1
(-0.4)
P 		2690.6
(2.5)
P 		1401.4
(-3)
P 		1655.8
(-1.9)
P 		1598.6
(-2.2)
P 		2807.7
(3)
P 		1406
C 1602.6
(-2.2)
P 		2645.6
(3)
P 		2215.2
(0.9)
P 		1625.9
(-2)
P 		1433.8
(-3)
P 		2633.6
(2.9)
P 		1212
avr 1967.2
(-1.2) 		2469.6
(1.3) 		1872.1
(-1.6) 		1688.7
(-2.6) 		1601.4
(-3) 		2802
(3) 		1201
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 576
1 2 3 4 range
A 1059.6
(3)
P 		578.9
(-2)
P 		827.2
(0.6)
P 		483.4
(-3)
P 		576
B 952.6
(3)
P 		698.6
(-1.1)
P 		578
(-3)
P 		597.3
(-2.7)
P 		375
C 940
(2)
P 		781.7
(0.1)
P 		1016.4
(3)
P 		535.7
(-3)
P 		481
avr 984.1
(3) 		686.4
(-1) 		807.2
(0.6) 		538.8
(-3) 		445

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 720
1 2 3 4 5 6 range
A 422.1
(-3)
P 		737.1
(3)
P 		435.5
(-2.7)
P 		452.5
(-2.4)
P 		534.7
(-0.9)
P 		721.8
(2.7)
P 		315
B 699.1
(0)
P 		895.6
(1.7)
P 		340.3
(-3)
P 		438.6
(-2.2)
P 		649.5
(-0.4)
P 		1047
(3)
P 		707
C 594
(-0.1)
P 		807.3
(2.2)
P 		563.8
(-0.4)
P 		327
(-3)
P 		463.9
(-1.5)
P 		881.6
(3)
P 		555
avr 571.7
(-0.9) 		813.3
(2.1) 		446.5
(-2.5) 		406
(-3) 		549.4
(-1.2) 		883.5
(3) 		478
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185645_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11106
Sequence Type Exemplar sequence
Representative Public ID F15B10.1 NCBI
Target Description F15B10.1 /REP_DB=WormBase Gene ID /WP=CE16987 /TR=O44166 /GB=AAB88349.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068616(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068616 NCBI Caenorhabditis elegans F15B10.1 (F15B10.1) mRNA, complete cds. 11/11 None
SNAP00000005366 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6604157:6606167:-1 11/11 None
GENEFINDER00000005371 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6604157:6606167:-1 11/11 None
F15B10.1 ENSEMBL cdna:known chromosome:CEL140:IV:6604018:6606172:-1 gene:F15B10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6604162-6606173(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15B10.1
Entrez Gene 177424 Entrez gene
SwissProt O44166 EMBL-EBI
WormBase CE16987 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.2845.1.S1_AT similar to solute carrier family 35, member B4 cfa
CANINE_2:CFAAFFX.2846.1.S1_S_AT similar to solute carrier family 35, member B4 cfa
DROSOPHILA_2:1634675_S_AT dm
DROSGENOME1:144581_AT dm
CHICKEN:GGA.1804.1.S1_AT similar to solute carrier family 35, member B4; YEA4 protein gga
CHICKEN:GGAAFFX.22590.1.S1_AT similar to solute carrier family 35, member B4; YEA4 protein gga
CHICKEN:GGAAFFX.22590.2.S1_AT similar to solute carrier family 35, member B4; YEA4 protein gga
CHICKEN:GGAAFFX.22590.3.S1_S_AT similar to solute carrier family 35, member B4; YEA4 protein gga
HU35KSUBC:RC_AA504262_AT solute carrier family 35, member B4 hs
HU35KSUBC:RC_AA429474_AT solute carrier family 35, member B4 hs
HU35KSUBD:RC_AA620567_AT solute carrier family 35, member B4 hs
U133_X3P:HS.292566.0.A1_3P_AT solute carrier family 35, member B4 hs
U133_X3P:HS.173051.0.A2_3P_X_AT solute carrier family 35, member B4 hs
U133_X3P:HS.173051.0.A2_3P_AT solute carrier family 35, member B4 hs
U133_X3P:HS.173051.0.A1_3P_AT solute carrier family 35, member B4 hs
HG-U133_PLUS_2:225881_AT solute carrier family 35, member B4 hs
HG-U133B:225881_AT solute carrier family 35, member B4 hs
HG-U133_PLUS_2:225882_AT solute carrier family 35, member B4 hs
HG-U133B:225882_AT solute carrier family 35, member B4 hs
HG-U133_PLUS_2:238418_AT solute carrier family 35, member B4 hs
HG-U133B:238418_AT solute carrier family 35, member B4 hs
HG-U95B:54813_AT solute carrier family 35, member B4 hs
HG-U95C:62567_AT solute carrier family 35, member B4 hs
HG-U95E:77538_AT solute carrier family 35, member B4 hs
HG-U95D:87338_AT solute carrier family 35, member B4 hs
MG-U74BV2:113101_F_AT solute carrier family 35, member B4 mm
MG-U74BV2:113216_F_AT solute carrier family 35, member B4 mm
MG-U74BV2:113215_I_AT solute carrier family 35, member B4 mm
MG-U74CV2:134386_AT solute carrier family 35, member B4 mm
MG-U74BV2:164753_F_AT solute carrier family 35, member B4 mm
MOE430A:1416548_AT solute carrier family 35, member B4 mm
MOUSE430A_2:1416548_AT solute carrier family 35, member B4 mm
MOUSE430_2:1416548_AT solute carrier family 35, member B4 mm
MOE430A:1416549_AT solute carrier family 35, member B4 mm
MOUSE430A_2:1416549_AT solute carrier family 35, member B4 mm
MOUSE430_2:1416549_AT solute carrier family 35, member B4 mm
MOE430A:1416550_AT solute carrier family 35, member B4 mm
MOUSE430A_2:1416550_AT solute carrier family 35, member B4 mm
MOUSE430_2:1416550_AT solute carrier family 35, member B4 mm
MOE430B:1431941_AT solute carrier family 35, member B4 mm
MOUSE430_2:1431941_AT solute carrier family 35, member B4 mm
MU19KSUBA:TC16701_S_AT Solute carrier family 35, member B4, mRNA (cDNA clone MGC:36819 IMAGE:4017336) mm
MU19KSUBB:TC30093_AT Solute carrier family 35, member B4, mRNA (cDNA clone MGC:36819 IMAGE:4017336) mm
MU19KSUBC:TC37812_AT Solute carrier family 35, member B4, mRNA (cDNA clone MGC:36819 IMAGE:4017336) mm
RG-U34C:RC_AI169653_AT solute carrier family 35, member B4 (predicted) rn
RAE230A:1388760_AT Solute carrier family 35, member B4 (predicted) rn
RAT230_2:1388760_AT Solute carrier family 35, member B4 (predicted) rn
RG-U34C:RC_AI235331_AT Solute carrier family 35, member B4 (predicted) rn
YEAST_2:1778274_AT Uridine diphosphate-N-acetylglucosamine (UDP-GlcNAc) transporter required for cell wall chitin synthesis; localized to the ER Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15780 nucleotide-sugar transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5338 nucleotide-sugar transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB88349 Hypothetical protein F15B10.1 [Caenorhabditis elegans] ref|NP_501017.1| F15B10.1 [Caenorhabditis elegans] 1.0E-176
blast CAE61502 Hypothetical protein CBG05401 [Caenorhabditis briggsae] 1.0E-159
blast AAN09162 CG3774-PB, isoform B [Drosophila melanogaster] gb|AAF46131.1| CG3774-PA, isoform A [Drosophila melanogaster] ref|NP_727071.1| CG3774-PB, isoform B [Drosophila melanogaster] ref|NP_572299.1| CG3774-PA, isoform A [Drosophila melanogaster] 5.0E-69
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501017.1 9 4-26,31-53,95-117,122-141,161-179,196-218,228-250,262-284,289-311
F15B10.1 9 4-26,31-53,95-117,122-141,161-179,196-218,228-250,262-284,289-311
SNAP00000005366 9 4-26,31-53,95-117,122-141,161-179,196-218,228-250,262-284,289-311
GENEFINDER00000005371 9 4-26,31-53,95-117,122-141,161-179,196-218,228-250,262-284,289-311
Sequence
Target Sequence 
>C. ELEGANS:185645_S_AT
tttccgtattcgctattaccatcggaattgtcatttgcacacttgccacgtcaacacaag
gagattcgggactttcgatggaagaagcatcgaaacattataaggaatggacgattggaa
ttattatgctcacttttgctctattggcttcagctgttttagcaatctatcaacaacaaa
tgtacgagaagtatgggaaacatccagatgaagctatgttcattactcatttgatctcac
ttccattcttcctcatcatgggaagcgacattgtgtcagcggctacgaaactttctgcca
gtgctccacattctgtattcccatggcttccatctctctgggttgatttgattgcaagtt
gtcttcttcaatacggatgcatcaagtacgtctatcaactgaactctcgtgttgattcgc
tcaccgtcacgctggttgttactcttcggaaattcctctcacttatcgtttccattgtct
atttcaagaatccatttacacctcaacattggcttggagccattcttgtctttgctggaa
ctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCGTATTCGCTATTACCATCGG 639 667 380 Antisense
GGAATTGTCATTTGCACACTTGCCA 144 535 403 Antisense
TTATGCTCACTTTTGCTCTATTGGC 263 681 503 Antisense
GCGACATTGTGTCAGCGGCTACGAA 216 289 644 Antisense
GCTACGAAACTTTCTGCCAGTGCTC 46 301 661 Antisense
CTTCCATCTCTCTGGGTTGATTTGA 427 219 706 Antisense
TGAACTCTCGTGTTGATTCGCTCAC 699 573 779 Antisense
TCACGCTGGTTGTTACTCTTCGGAA 510 625 806 Antisense
CTTCGGAAATTCCTCTCACTTATCG 113 221 823 Antisense
TCACTTATCGTTTCCATTGTCTATT 183 627 838 Antisense
GCCATTCTTGTCTTTGCTGGAACTC 178 281 898 Antisense
Sequence Source Affymetrix Proprietary Database