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[185643_s_at]

Description F53A9.10 /REP_DB=WormBase Gene ID /WP=CE02761 /TR=Q20694 /GB=AAC46565.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 80      4grp_highest_8_8 > 09      4grp_high_8_8 > 62      6grp_highest_nonorm > 27      6grp_total > 82      4grp_total > 58      6grp_highest_sub > 04_05      6grp_cgc > 98      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9744
1 2 3 4 range
A 4056.1
(-0.6)
P 		7509
(1.7)
P 		9491.7
(3)
P 		439.3
(-3)
P 		9052
B 4319.8
(-0.6)
P 		7297.8
(1.3)
P 		10117.1
(3)
P 		373.5
(-3)
P 		9744
C 4072.4
(-0.5)
P 		8011
(2.3)
P 		9052.1
(3)
P 		479.5
(-3)
P 		8573
avr 4149.4
(-0.6) 		7605.9
(1.7) 		9553.6
(3) 		430.8
(-3) 		9123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7560
1 2 3 4 5 6 range
A 5554.4
(-3)
P 		8862.8
(1.9)
P 		7728.1
(0.2)
P 		9265.3
(2.5)
P 		9629.6
(3)
P 		6232.2
(-2)
P 		4075
B 5099.8
(-2.4)
P 		6565.8
(-0.4)
P 		8194
(1.8)
P 		8490.5
(2.1)
P 		9134.6
(3)
P 		4617.9
(-3)
P 		4517
C 6681.9
(-0.8)
P 		7077.6
(-0.5)
P 		10882.7
(2.5)
P 		6801.9
(-0.7)
P 		11487.4
(3)
P 		3927.1
(-3)
P 		7560
avr 5778.7
(-2) 		7502.1
(-0) 		8934.9
(1.7) 		8185.9
(0.8) 		10083.9
(3) 		4925.7
(-3) 		5158
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3091
1 2 3 4 range
A 1476.8
(0.5)
P 		1630
(0.9)
P 		2481.3
(3)
P 		64.3
(-3)
P 		2417
B 1377.6
(0.4)
P 		1802.4
(1.6)
P 		2344.4
(3)
P 		79.6
(-3)
P 		2265
C 1348.1
(-0.5)
P 		2303.2
(1.3)
P 		3154.9
(3)
P 		80.8
(-3)
P 		3074
avr 1400.8
(0.1) 		1911.9
(1.3) 		2660.2
(3) 		74.9
(-3) 		2585

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2693
1 2 3 4 5 6 range
A 1023.9
(-3)
P 		3152
(3)
P 		1683
(-1.1)
P 		2349.9
(0.7)
P 		2905.8
(2.3)
P 		1517.3
(-1.6)
P 		2128
B 1774.5
(-2.8)
P 		2185.5
(-1.6)
P 		1989.7
(-2.2)
P 		2248.8
(-1.4)
P 		3711.3
(3)
P 		1722
(-3)
P 		1989
C 2476.7
(-0.1)
P 		2159.6
(-0.9)
P 		2769.8
(0.6)
P 		1367.9
(-2.9)
P 		3717.2
(3)
P 		1314.6
(-3)
P 		2403
avr 1758.4
(-2.3) 		2499
(0.1) 		2147.5
(-1) 		1988.9
(-1.5) 		3444.8
(3) 		1518
(-3) 		1927
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185643_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16142
Sequence Type Exemplar sequence
Representative Public ID F53A9.10 NCBI
Target Description F53A9.10 /REP_DB=WormBase Gene ID /WP=CE02761 /TR=Q20694 /GB=AAC46565.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029533(11), NM_001029532(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029533 NCBI Caenorhabditis elegans TropoNin T family member (tnt-2) (tnt-2) mRNA, complete cds. 11/11 None
NM_001029532 NCBI Caenorhabditis elegans TropoNin T family member (tnt-2) (tnt-2) mRNA, complete cds. 11/11 None
SNAP00000001080 ENSEMBL cdna:SNAP chromosome:CEL140:X:8721702:8723480:-1 11/11 None
GENEFINDER00000001088 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8721702:8723759:-1 11/11 None
F53A9.10b.4 ENSEMBL cdna:known chromosome:CEL140:X:8721497:8723490:-1 gene:F53A9.10 11/11 None
F53A9.10b.3 ENSEMBL cdna:known chromosome:CEL140:X:8721497:8723364:-1 gene:F53A9.10 11/11 None
F53A9.10b.2 ENSEMBL cdna:known chromosome:CEL140:X:8721497:8723488:-1 gene:F53A9.10 11/11 None
F53A9.10b.1 ENSEMBL cdna:known chromosome:CEL140:X:8721497:8723488:-1 gene:F53A9.10 11/11 None
F53A9.10a ENSEMBL cdna:known chromosome:CEL140:X:8721702:8723490:-1 gene:F53A9.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8721700-8723758(-) 100.0 100.0
Public Domain and Genome References
Ensembl F53A9.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP68941 Troponin t protein 2, isoform a [Caenorhabditis elegans] ref|NP_001024703.1| TropoNin T family member (tnt-2) [Caenorhabditis elegans] 1.0E-149
blast AAP68942 Troponin t protein 2, isoform b [Caenorhabditis elegans] ref|NP_001024704.1| TropoNin T family member (tnt-2) [Caenorhabditis elegans] 1.0E-149
blast T16441 hypothetical protein F53A9.10 - Caenorhabditis elegans 1.0E-149
Protein Domains
Database ID Description E-Value
Pfam IPR001978 EMBL-EBI Troponin 1.1E-8
Pfam IPR001978 EMBL-EBI Troponin 1.1E-8
Pfam IPR001978 EMBL-EBI Troponin 3.5E-7
Sequence
Target Sequence 
>C. ELEGANS:185643_S_AT
gcaaggcccaagatgtttcaacactcatgccaaacgatttgaaggagagaatcaagggaa
ttcatgcccgtattgtcaagcttgagggagaaaagtacgatttggaaaagagacgtgagc
gtcaagagtacgacttgaaagagctcaacgagcgtcaacgccaagttgctcgtaacaagg
ccctcaagaaaggacttgacccagaggaagccgcctcttccgtccatccacctaagatca
ccacagcctccaagttcgatcgtcagactgacagaagatcatatggtgatcgtcgttacc
tcttcgaaaacccattcgtcaagccagcctacacccttgtccacggaacatcccggccgc
cagcagaatggggacgcaaagagaacgaggaacttgaacagatcagaaagaaccttgaac
caccaaagtacgtcgaacaagtgaaagccgagggagatgcagccaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAGGCCCAAGATGTTTCAACACT 599 321 833 Antisense
TTTCAACACTCATGCCAAACGATTT 419 671 848 Antisense
AATTCATGCCCGTATTGTCAAGCTT 112 177 891 Antisense
CCAAGTTGCTCGTAACAAGGCCCTC 379 275 993 Antisense
ACTTGACCCAGAGGAAGCCGCCTCT 244 101 1026 Antisense
CCTCCAAGTTCGATCGTCAGACTGA 709 265 1079 Antisense
ATATGGTGATCGTCGTTACCTCTTC 667 21 1113 Antisense
CGAAAACCCATTCGTCAAGCCAGCC 56 253 1137 Antisense
TCCCGGCCGCCAGCAGAATGGGGAC 457 585 1183 Antisense
GAACCACCAAAGTACGTCGAACAAG 123 345 1249 Antisense
GAAAGCCGAGGGAGATGCAGCCAAG 123 359 1275 Antisense
Sequence Source Affymetrix Proprietary Database