[Home] | [Total List]

[185642_at]

Description ZK1193.4 /REP_DB=WormBase Gene ID /WP=CE05129 /TR=Q23412 /GB=AAA83294.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 3.9
(-3)
A 		4.1
(-3)
A 		6.8
(-2.8)
A 		118.7
(3)
A 		115
B 5.5
(-3)
A 		11.8
(3)
A 		6.1
(-2.4)
A 		7.7
(-0.9)
A 		6
C 9
(0.5)
A 		7.9
(-0.2)
A 		3.6
(-3)
A 		12.9
(3)
A 		9
avr 6.1
(-2.9) 		7.9
(-2.6) 		5.5
(-3) 		46.4
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 9.1
(-1.6)
A 		26.1
(3)
A 		6.2
(-2.4)
A 		4
(-3)
A 		13.1
(-0.5)
A 		7
(-2.2)
A 		22
B 11
(3)
A 		5.3
(-2.4)
A 		8
(0.1)
A 		10.6
(2.6)
A 		6.3
(-1.5)
A 		4.7
(-3)
A 		6
C 5.3
(-3)
A 		7.5
(-2.8)
A 		11.5
(-2.5)
A 		73.5
(3)
A 		5.3
(-3)
A 		26.4
(-1.1)
A 		68
avr 8.5
(-2.9) 		13
(-1.6) 		8.6
(-2.9) 		29.4
(3) 		8.2
(-3) 		12.7
(-1.7) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 1.4
(-2.8)
A 		0.9
(-3)
A 		1.8
(-2.7)
A 		17.4
(3)
A 		17
B 1.8
(-1.4)
A 		2.9
(3)
A 		1.4
(-3)
A 		1.6
(-2.2)
A 		2
C 3
(3)
A 		2.3
(0.5)
A 		1.3
(-3)
A 		2.2
(0.2)
A 		2
avr 2.1
(-2.4) 		2
(-2.5) 		1.5
(-3) 		7.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.7
(-2.5)
A 		9.3
(3)
A 		1.4
(-2.7)
A 		1
(-3)
A 		4
(-0.8)
A 		1.7
(-2.5)
A 		8
B 3.8
(3)
A 		1.8
(-2.7)
A 		2
(-2.1)
A 		2.8
(0.1)
A 		2.6
(-0.4)
A 		1.7
(-3)
A 		2
C 2
(-2.9)
A 		2.3
(-2.7)
A 		2.9
(-2.5)
A 		14.8
(3)
A 		1.7
(-3)
A 		8.8
(0.3)
A 		13
avr 2.5
(-2.4) 		4.5
(0.5) 		2.1
(-3) 		6.2
(3) 		2.8
(-2) 		4.1
(-0.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185642_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18581
Sequence Type Exemplar sequence
Representative Public ID ZK1193.4 NCBI
Target Description ZK1193.4 /REP_DB=WormBase Gene ID /WP=CE05129 /TR=Q23412 /GB=AAA83294.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075700(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075700 NCBI Caenorhabditis elegans ZK1193.4 (ZK1193.4) mRNA, complete cds. 11/11 None
ZK1193.4 ENSEMBL cdna:known chromosome:CEL140:X:423305:426402:-1 gene:ZK1193.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031651 8/11 Cross Hyb Matching Probes None
GENEFINDER00000031659 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:423304-426402(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1193.4
Entrez Gene 191531 Entrez gene
SwissProt Q23412 EMBL-EBI
WormBase CE05129 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83294 Hypothetical protein ZK1193.4 [Caenorhabditis elegans] ref|NP_508101.1| ZK1193.4 [Caenorhabditis elegans] 1.0E-105
blast CAE63663 Hypothetical protein CBG08165 [Caenorhabditis briggsae] 3.0E-80
Sequence
Target Sequence 
>C. ELEGANS:185642_AT
gatattctccgagcacgttttcactgcttttgtaactgcgacttgctccgacactttcac
tttttacgtcgacaattttatcgaagagttctttgtaattatcaatacactcgacgccct
caatccgcgggcaacagtttataatccgattggaggcgaagtgtccacatgcaaagatat
caccacggacgtcactcaaacaattcaccttatctgcaacggaaagaatgttcacggaac
tggagcgtatacggttcagctctctgcagatttgaacaaaccgtgtatatttgaagtccg
agctccaacaaagctgacagttgatggtgggtttgtagaggatgttcgtgacgatgacgt
tcagaaagtaatattttccactgcaaatcaaggaatattccgtttcccacttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATTCTCCGAGCACGTTTTCACT 306 427 36 Antisense
GCACGTTTTCACTGCTTTTGTAACT 542 313 48 Antisense
TTTTGTAACTGCGACTTGCTCCGAC 310 677 63 Antisense
CACTTTCACTTTTTACGTCGACAAT 230 195 87 Antisense
TAATTATCAATACACTCGACGCCCT 68 631 131 Antisense
CCTCAATCCGCGGGCAACAGTTTAT 287 267 153 Antisense
GCAAAGATATCACCACGGACGTCAC 179 319 206 Antisense
GGACGTCACTCAAACAATTCACCTT 80 525 222 Antisense
TATACGGTTCAGCTCTCTGCAGATT 614 659 283 Antisense
GTATATTTGAAGTCCGAGCTCCAAC 261 453 320 Antisense
CAAGGAATATTCCGTTTCCCACTTG 237 183 424 Antisense
Sequence Source Affymetrix Proprietary Database