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[185641_at]

Description Y17G9A.4 /REP_DB=WormBase Gene ID /WP=CE24178 /TR=Q9N484 /GB=AAF60440.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 3.6
(-3)
A 		33.4
(3)
A 		5.1
(-2.7)
A 		9.9
(-1.7)
A 		30
B 3
(-3)
A 		6.7
(-1.7)
A 		6
(-2)
A 		20.2
(3)
A 		17
C 7.8
(-2.8)
A 		9.1
(-2.7)
A 		5.1
(-3)
A 		76.6
(3)
A 		72
avr 4.8
(-3) 		16.4
(-0.7) 		5.4
(-2.9) 		35.6
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 7.7
(3)
A 		2.5
(-3)
A 		4
(-1.3)
A 		3.5
(-1.8)
A 		3.2
(-2.2)
A 		4.7
(-0.5)
A 		5
B 7.4
(-2.3)
A 		4.7
(-2.8)
A 		3.5
(-3)
A 		3.6
(-3)
A 		35.3
(3)
A 		19.1
(-0.1)
A 		32
C 27
(0.7)
A 		5.1
(-2.7)
A 		41.8
(3)
A 		5.4
(-2.7)
A 		3.3
(-3)
A 		4.3
(-2.8)
A 		39
avr 14
(1.8) 		4.1
(-3) 		16.4
(3) 		4.2
(-3) 		13.9
(1.8) 		9.4
(-0.4) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.3
(-3)
A 		7.2
(3)
A 		1.3
(-3)
A 		1.4
(-2.9)
A 		6
B 0.9
(-3)
A 		1.7
(-1.6)
A 		1.4
(-2.1)
A 		4.3
(3)
A 		3
C 2.6
(-2.6)
A 		2.6
(-2.6)
A 		1.8
(-3)
A 		12.9
(3)
A 		11
avr 1.6
(-2.9) 		3.8
(-0.1) 		1.5
(-3) 		6.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.4
(3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1
(-1.8)
A 		1.1
(-0.6)
A 		0
B 2.6
(-2.2)
A 		1.6
(-2.7)
A 		0.9
(-3)
A 		1
(-3)
A 		14.3
(3)
A 		7.1
(-0.2)
A 		13
C 10
(2.6)
A 		1.6
(-2.7)
A 		10.6
(3)
A 		1.1
(-3)
A 		1.1
(-3)
A 		1.5
(-2.7)
A 		10
avr 4.7
(1.9) 		1.4
(-2.5) 		4.1
(1.1) 		1
(-3) 		5.5
(3) 		3.2
(-0.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185641_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11240
Sequence Type Exemplar sequence
Representative Public ID Y17G9A.4 NCBI
Target Description Y17G9A.4 /REP_DB=WormBase Gene ID /WP=CE24178 /TR=Q9N484 /GB=AAF60440.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068257(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068257 NCBI Caenorhabditis elegans Y17G9A.4 (Y17G9A.4) mRNA, complete cds. 11/11 None
GENEFINDER00000012355 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4856881:4861396:-1 9/11 None
Y17G9A.4 ENSEMBL cdna:known chromosome:CEL140:IV:4859245:4861396:-1 gene:Y17G9A.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012344 2/11 Cross Hyb Matching Probes None
SNAP00000012345 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4859250-4861402(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y17G9A.4
Entrez Gene 189461 Entrez gene
SwissProt Q9N484 EMBL-EBI
WormBase CE24178 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7217 tachykinin signaling pathway inferred from electronic annotation QuickGO AmiGO
7268 synaptic transmission inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_500658 Y17G9A.4 [Caenorhabditis elegans] gb|AAF60440.1| Hypothetical protein Y17G9A.4 [Caenorhabditis elegans] 0.0
blast NP_500658 Y17G9A.4 [Caenorhabditis elegans] gb|AAF60440.1| Hypothetical protein Y17G9A.4 [Caenorhabditis elegans] 1.0E-164
blast NP_500657 Y17G9A.3 [Caenorhabditis elegans] gb|AAF60439.1| Hypothetical protein Y17G9A.3 [Caenorhabditis elegans] 1.0E-125
blast NP_500657 Y17G9A.3 [Caenorhabditis elegans] gb|AAF60439.1| Hypothetical protein Y17G9A.3 [Caenorhabditis elegans] 7.0E-80
blast NP_500656 Y17G9A.2 [Caenorhabditis elegans] gb|AAF60437.2| Hypothetical protein Y17G9A.2 [Caenorhabditis elegans] 1.0E-54
blast NP_500656 Y17G9A.2 [Caenorhabditis elegans] gb|AAF60437.2| Hypothetical protein Y17G9A.2 [Caenorhabditis elegans] 3.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 4.6E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500658.1 2 17-39,237-259
Y17G9A.4 2 17-39,237-259
GENEFINDER00000012355 3 17-39,237-259,432-454
Sequence
Target Sequence 
>C. ELEGANS:185641_AT
tgtaaaactctctgaaaacctcgaaaattctcgttttgttggactaatgggaaaagatct
ggacgtatcgattcgctcggccaacagttttggaagagtctggggacctggatggtggga
ttcaattgatgaagtctatccggactcgaagaaacaaactggcaaacattccagccaaca
ttttttattaattttggcatttctttggctatgtgcattaatctcatttggagtcacact
cataattattcaatggatagaaaaagttaaaagtcccagattaccgttggaaatggatta
catttggccgaaaaatgtgaagaaaattgtggattatgtgattgaaaatgatatgcatgt
aacgaattatgatagggcagttttaatcaaaactgaacttatgaggcagcctgatattag
catttccctagaaaaactcgccagcgaaattgaaaattctcgttttattggattatttga
aaagtatcaagaagttgcaattgaatcggctaacagttttaatggaagaggctgggggcc
gggatggtggaataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTAAAACTCTCTGAAAACCTCGAA 179 557 540 Antisense
AGATCTGGACGTATCGATTCGCTCG 87 67 594 Antisense
ATTCGCTCGGCCAACAGTTTTGGAA 418 9 610 Antisense
GAGTCTGGGGACCTGGATGGTGGGA 220 401 635 Antisense
GATGAAGTCTATCCGGACTCGAAGA 305 413 667 Antisense
GGCAAACATTCCAGCCAACATTTTT 12 533 700 Antisense
TTGGCATTTCTTTGGCTATGTGCAT 346 709 733 Antisense
AAGTCCCAGATTACCGTTGGAAATG 449 155 810 Antisense
GGCAGCCTGATATTAGCATTTCCCT 168 521 944 Antisense
TTTCCCTAGAAAAACTCGCCAGCGA 435 669 962 Antisense
GCTGGGGGCCGGGATGGTGGAATAA 476 293 1070 Antisense
Sequence Source Affymetrix Proprietary Database