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[185640_s_at]

Description F43B10.2 /REP_DB=WormBase Gene ID /WP=CE19871 /TR=Q9TZM9 /GB=AAC67399.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 29      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 50      6grp_total > 28      4grp_total > 63      6grp_cgc > 04      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 583.4
(3)
P 		441.6
(-2.9)
P 		482.8
(-1.2)
P 		439.3
(-3)
P 		144
B 437.2
(-3)
P 		473.9
(1.6)
P 		467.8
(0.9)
P 		484.7
(3)
P 		48
C 533.5
(3)
P 		466.2
(0.1)
P 		510
(2)
P 		396.1
(-3)
P 		137
avr 518
(3) 		460.6
(-1.4) 		486.9
(0.6) 		440
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 317
1 2 3 4 5 6 range
A 622.8
(3)
P 		491.9
(0.3)
P 		329.3
(-3)
P 		369.1
(-2.2)
P 		540.6
(1.3)
P 		562.9
(1.8)
P 		294
B 646.7
(3)
P 		566.4
(1.4)
P 		349.4
(-3)
P 		407.3
(-1.8)
P 		444.1
(-1.1)
P 		506.8
(0.2)
P 		297
C 570.8
(3)
P 		535
(1.9)
P 		377.6
(-3)
P 		402.5
(-2.2)
P 		498.9
(0.8)
P 		391.3
(-2.6)
P 		193
avr 613.4
(3) 		531.1
(1.1) 		352.1
(-3) 		393
(-2.1) 		494.5
(0.3) 		487
(0.1) 		261
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 212.4
(3)
P 		95.9
(-1.7)
P 		126.2
(-0.5)
P 		64.3
(-3)
P 		148
B 139.4
(3)
P 		117.1
(-0.7)
P 		108.4
(-2.2)
P 		103.3
(-3)
P 		36
C 176.6
(2.9)
P 		134
(0.6)
P 		177.8
(3)
P 		66.8
(-3)
P 		111
avr 176.1
(3) 		115.7
(-0.7) 		137.5
(0.6) 		78.1
(-3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 114.8
(-0.5)
P 		175
(3)
P 		71.7
(-3)
P 		93.6
(-1.7)
P 		163.1
(2.3)
P 		137
(0.8)
P 		103
B 225
(3)
P 		188.5
(1.4)
P 		84.8
(-3)
P 		107.9
(-2)
P 		180.4
(1.1)
P 		189
(1.5)
P 		140
C 211.6
(3)
P 		163.3
(0.8)
P 		96.1
(-2.3)
P 		80.9
(-3)
P 		161.4
(0.7)
P 		131
(-0.7)
P 		131
avr 183.8
(3) 		175.6
(2.5) 		84.2
(-3) 		94.1
(-2.4) 		168.3
(2.1) 		152.3
(1.1) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185640_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17677
Sequence Type Exemplar sequence
Representative Public ID F43B10.2 NCBI
Target Description F43B10.2 /REP_DB=WormBase Gene ID /WP=CE19871 /TR=Q9TZM9 /GB=AAC67399.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078291(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078291 NCBI Caenorhabditis elegans F43B10.2 (F43B10.2) mRNA, complete cds. 10/11 None
GENEFINDER00000034870 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16665075:16674676:-1 11/11 None
F43B10.2 ENSEMBL cdna:known chromosome:CEL140:X:16665029:16674645:-1 gene:F43B10.2 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034867 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16665348-16674645(-) 95.69 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-343
Ensembl F43B10.2
Entrez Gene 181722 Entrez gene
SwissProt Q9TZM9 EMBL-EBI
WormBase CE35536 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67399 Temporarily assigned gene name protein 343 [Caenorhabditis elegans] ref|NP_510692.2| F43B10.2 [Caenorhabditis elegans] 0.0
blast CAE69950 Hypothetical protein CBG16339 [Caenorhabditis briggsae] 1.0E-180
blast CAE69950 Hypothetical protein CBG16339 [Caenorhabditis briggsae] 1.0E-179
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510692.2 1 973-995
F43B10.2 1 973-995
GENEFINDER00000034870 1 1007-1029
Sequence
Target Sequence 
>C. ELEGANS:185640_S_AT
ggagaagctgactatgtttccagaaatttaccattgggagtaaccgaggaaacaacgaca
actacaactacaactcgtaatgaagaaattgaaagaaagaggagaaagaagaaggaggag
gaggataggaagaagagcgaggaaatttatgttccttataataacggcgaacaagactat
gatcgttacaacaactatcgtgatgcagaaaatgcgctgatcgaggaggaatacaatacg
agacacttgaagcgtaccaccgagcatccacacagaaaacaacctccacagaaaagagac
aacaccaaggatcagcataggggagggaaaaaatcaaggtatattcgaatcaaaaaccga
acaacgtattacggagatgaatgtcaacgccatcatcactcaagagaaactaaacatcga
attggttggtctccatctaactaccgtaacccacgtgactgtttccttaatcttctatgt
ttcattattgctccactagtcattatactcatccttgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGAAGCTGACTATGTTTCCAGAA 589 519 2506 Antisense
CGTTACAACAACTATCGTGATGCAG 114 247 2689 Antisense
ACGAGACACTTGAAGCGTACCACCG 461 93 2743 Antisense
CACCGAGCATCCACACAGAAAACAA 348 199 2763 Antisense
GAGACAACACCAAGGATCAGCATAG 193 393 2801 Antisense
TCAACGCCATCATCACTCAAGAGAA 246 631 2889 Antisense
GAATTGGTTGGTCTCCATCTAACTA 570 323 2924 Antisense
CATCTAACTACCGTAACCCACGTGA 5 211 2939 Antisense
GTGACTGTTTCCTTAATCTTCTATG 257 481 2960 Antisense
GTTTCATTATTGCTCCACTAGTCAT 31 451 2984 Antisense
ACTAGTCATTATACTCATCCTTGTG 704 101 3000 Antisense
Sequence Source Affymetrix Proprietary Database