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[185639_at]

Description C05E11.7 /REP_DB=WormBase Gene ID /WP=CE03937 /TR=Q17665 /GB=AAA96193.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 49      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 65
(-3)
A 		241.2
(2.2)
A 		268.4
(3)
A 		100.7
(-1.9)
A 		203
B 81.5
(-3)
A 		291.9
(3)
A 		250.1
(1.8)
A 		104.7
(-2.3)
A 		210
C 87.3
(-3)
A 		280.6
(3)
A 		192.5
(0.3)
A 		152
(-1)
A 		193
avr 77.9
(-3) 		271.2
(3) 		237
(1.9) 		119.1
(-1.7) 		193

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 157.7
(0)
A 		124.6
(-3)
A 		127.3
(-2.8)
A 		170.6
(1.2)
A 		189.8
(3)
A 		129.3
(-2.6)
A 		65
B 110.2
(-1.7)
A 		150.1
(1.5)
A 		131.3
(0)
A 		167.9
(3)
A 		150.7
(1.6)
A 		94.7
(-3)
A 		73
C 94.7
(-3)
A 		170.8
(0.2)
A 		143.8
(-0.9)
A 		235.4
(3)
A 		179.9
(0.6)
A 		97.3
(-2.9)
A 		141
avr 120.9
(-2) 		148.5
(-0) 		134.1
(-1.1) 		191.3
(3) 		173.5
(1.7) 		107.1
(-3) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 23.7
(-2)
A 		52.4
(1.1)
A 		70.2
(3)
A 		14.7
(-3)
A 		56
B 26
(-2.6)
A 		72.1
(3)
A 		58
(1.3)
A 		22.3
(-3)
A 		50
C 28.9
(-2.6)
A 		80.7
(3)
A 		67.1
(1.5)
A 		25.6
(-3)
A 		55
avr 26.2
(-2.3) 		68.4
(3) 		65.1
(2.6) 		20.9
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 29.1
(-2.7)
A 		44.3
(0.4)
A 		27.7
(-3)
A 		43.3
(0.2)
A 		57.3
(3)
A 		31.5
(-2.2)
A 		30
B 38.3
(-1.7)
A 		50
(0.7)
A 		31.9
(-3)
A 		44.5
(-0.4)
A 		61.2
(3)
A 		35.3
(-2.3)
A 		29
C 35.1
(-2.4)
A 		52.1
(1.6)
A 		36.6
(-2.1)
A 		47.3
(0.4)
A 		58.2
(3)
A 		32.6
(-3)
A 		26
avr 34.2
(-2.5) 		48.8
(0.7) 		32.1
(-3) 		45
(-0.1) 		58.9
(3) 		33.1
(-2.8) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185639_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16114
Sequence Type Exemplar sequence
Representative Public ID C05E11.7 NCBI
Target Description C05E11.7 /REP_DB=WormBase Gene ID /WP=CE03937 /TR=Q17665 /GB=AAA96193.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076385(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076385 NCBI Caenorhabditis elegans C05E11.7 (C05E11.7) mRNA, complete cds. 11/11 None
SNAP00000025329 ENSEMBL cdna:SNAP chromosome:CEL140:X:4581746:4583272:-1 11/11 None
GENEFINDER00000025335 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4581746:4585484:-1 11/11 None
C05E11.7 ENSEMBL cdna:known chromosome:CEL140:X:4581568:4585635:-1 gene:C05E11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4581746-4585485(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05E11.7
Entrez Gene 182274 Entrez gene
SwissProt Q17665 EMBL-EBI
WormBase CE03937 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96193 Hypothetical protein C05E11.7 [Caenorhabditis elegans] ref|NP_508786.1| C05E11.7 [Caenorhabditis elegans] 0.0
blast CAE68616 Hypothetical protein CBG14498 [Caenorhabditis briggsae] 0.0
blast AAA96193 Hypothetical protein C05E11.7 [Caenorhabditis elegans] ref|NP_508786.1| C05E11.7 [Caenorhabditis elegans] 1.0E-115
blast CAE68616 Hypothetical protein CBG14498 [Caenorhabditis briggsae] 6.0E-76
blast T16876 hypothetical protein T14E8.3 - Caenorhabditis elegans 2.0E-34
Sequence
Target Sequence 
>C. ELEGANS:185639_AT
attgccctacctgagcagacaaatgtttacctgcgtccgcaaagaccaacttttgcggca
aacttgaccaacaataatgctgcccagctttatccgaatcaagttgaattgcaagaaaag
tcgaacatttggaataagggtgactatggtcagaaagtgcaatacaacaaagaacactgg
agacaaaaaacttcatcgggtgaattcgtctttacaactcaacatccactgtttacaaca
actgaatacggagcaacaccacgaagacataaggtaatcgacattctgaaaagtttgatt
ccgccgaatcttccatcccagctcactgctcttctggaaaacagttacgacaaggaaata
tttgccgaaacacaaagctataatacaccagcagtcgcaactccaatgtcgaatatatat
gccacatctcaagctgtctatcaacctgaaatagtgacaattgcgccgaaaaccacaatg
attccgccacaacctgtaaaaataacatatcgaccttctacaacccacgccaaaagcacc
atgatgacaaccacgcagccgatcgttcagtatccaatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCCCTACCTGAGCAGACAAATG 381 7 775 Antisense
AGACAAATGTTTACCTGCGTCCGCA 178 73 791 Antisense
TGACCAACAATAATGCTGCCCAGCT 577 569 839 Antisense
CTGCCCAGCTTTATCCGAATCAAGT 411 235 854 Antisense
TTCGTCTTTACAACTCAACATCCAC 359 695 979 Antisense
CAGCAGTCGCAACTCCAATGTCGAA 201 203 1163 Antisense
TATGCCACATCTCAAGCTGTCTATC 691 657 1192 Antisense
ATGATTCCGCCACAACCTGTAAAAA 395 45 1252 Antisense
ATAACATATCGACCTTCTACAACCC 391 23 1276 Antisense
CCCACGCCAAAAGCACCATGATGAC 434 257 1298 Antisense
CAGCCGATCGTTCAGTATCCAATAT 638 201 1330 Antisense
Sequence Source Affymetrix Proprietary Database