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[185637_at]

Description M01B12.5 /REP_DB=WormBase Gene ID /WP=CE18063 /TR=O44959 /GB=AAC17564.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 06      6grp_total > 58      4grp_total > 03      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 976
1 2 3 4 range
A 155.7
(-2.3)
P 		68.3
(-3)
A 		76.9
(-2.9)
A 		857.9
(3)
P 		790
B 128.8
(-2.5)
P 		53.4
(-3)
A 		103.4
(-2.7)
M 		1029.3
(3)
P 		976
C 195.9
(-2)
P 		74.1
(-3)
P 		145.4
(-2.4)
P 		819.3
(3)
P 		745
avr 160.1
(-2.3) 		65.3
(-3) 		108.6
(-2.7) 		902.2
(3) 		837

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 66.4
(-1.1)
A 		79.2
(-0.6)
P 		66.1
(-1.1)
A 		84.8
(-0.4)
A 		12
(-3)
A 		181.9
(3)
P 		170
B 116.7
(-0.8)
P 		67.6
(-2.5)
A 		65.4
(-2.6)
A 		53.6
(-3)
A 		66.3
(-2.6)
A 		226.8
(3)
P 		173
C 245.4
(3)
P 		80.7
(-1.6)
A 		32.3
(-3)
A 		41.4
(-2.7)
A 		70.8
(-1.9)
P 		216.1
(2.2)
P 		213
avr 142.8
(0.5) 		75.8
(-2) 		54.6
(-2.8) 		59.9
(-2.6) 		49.7
(-3) 		208.3
(3) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 56.7
(-0.7)
P 		14.8
(-3)
A 		20.1
(-2.7)
A 		125.6
(3)
P 		111
B 41.1
(-2.2)
P 		13.2
(-3)
A 		24
(-2.7)
M 		219.4
(3)
P 		206
C 64.9
(-0.8)
P 		21.3
(-3)
P 		50.7
(-1.5)
P 		138.1
(3)
P 		117
avr 54.2
(-1.4) 		16.4
(-3) 		31.6
(-2.4) 		161
(3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 12.2
(-1.7)
A 		28.2
(0.6)
P 		14.4
(-1.4)
A 		21.5
(-0.4)
A 		3.6
(-3)
A 		44.3
(3)
P 		41
B 40.6
(-0.8)
P 		22.5
(-2.3)
A 		15.9
(-2.9)
A 		14.2
(-3)
A 		26.9
(-1.9)
A 		84.6
(3)
P 		70
C 91
(3)
P 		24.6
(-1.8)
A 		8.2
(-3)
A 		8.3
(-3)
A 		22.9
(-1.9)
P 		72.3
(1.6)
P 		83
avr 47.9
(0.9) 		25.1
(-1.6) 		12.8
(-3) 		14.7
(-2.8) 		17.8
(-2.4) 		67.1
(3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185637_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.71
Sequence Type Exemplar sequence
Representative Public ID M01B12.5 NCBI
Target Description M01B12.5 /REP_DB=WormBase Gene ID /WP=CE18063 /TR=O44959 /GB=AAC17564.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026399(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026399 NCBI Caenorhabditis elegans M01B12.5a (M01B12.5) mRNA, complete cds. 11/11 None
M01B12.5a ENSEMBL cdna:known chromosome:CEL140:I:3085453:3096207:-1 gene:M01B12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171883 2 1 NM_001026399 185637_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3091283-3096207(-) 97.81 100.0
Public Domain and Genome References
Ensembl M01B12.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17564 Hypothetical protein M01B12.5a [Caenorhabditis elegans] ref|NP_001021570.1| M01B12.5a [Caenorhabditis elegans] 0.0
blast CAE60574 Hypothetical protein CBG04203 [Caenorhabditis briggsae] 0.0
blast AAP68904 Hypothetical protein M01B12.5b [Caenorhabditis elegans] ref|NP_001021571.1| M01B12.5b [Caenorhabditis elegans] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR000687 EMBL-EBI Protein of unknown function RIO1 9.9E-117
Sequence
Target Sequence 
>C. ELEGANS:185637_AT
gatgtatcacaatctgttgaacaggatcatccacacgcgctggaatttttgagaatggat
tgtaacaatgtgaacaagtttttcagagaactcggagtcccagttctatcagtccgccga
ctattcgaagtgattgtcgatccgctgatgagttccaaagaaatggagacaattattgaa
gaagaacgagttcttgtgaattcagaagatgattctctatttatgaatgcatttattcca
cataaactggagcatgttctacatttcgaacgggatggaaaacttgcaaaagagggtgtt
gaagcgaataacccattccaaaatattgtctcaaaaattgatttgaaaggtgatggattt
ggagaagagcacgatgatagtgatgataatgatgatgaggaaaatggaaaaaaatcgaga
aaaaagagagctgaaccgacggaagaagaaattcaagaaaaagaacgaaagattgctatg
cacacgagaaatcgtgaggagacggccgaagagcgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTATCACAATCTGTTGAACAGG 1 411 1042 Antisense
TTGAACAGGATCATCCACACGCGCT 40 703 1058 Antisense
CACACGCGCTGGAATTTTTGAGAAT 29 195 1073 Antisense
GAACTCGGAGTCCCAGTTCTATCAG 306 345 1129 Antisense
TTCTATCAGTCCGCCGACTATTCGA 225 609 1145 Antisense
CGAAGTGATTGTCGATCCGCTGATG 671 253 1167 Antisense
CGATCCGCTGATGAGTTCCAAAGAA 281 249 1179 Antisense
GGAGCATGTTCTACATTTCGAACGG 59 521 1290 Antisense
GTTGAAGCGAATAACCCATTCCAAA 572 437 1339 Antisense
AAAAGAGAGCTGAACCGACGGAAGA 230 131 1463 Antisense
GTGAGGAGACGGCCGAAGAGCGAAA 632 453 1535 Antisense
Sequence Source Affymetrix Proprietary Database