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[185636_at]

Description C45H4.10 /REP_DB=WormBase Gene ID /WP=CE08743 /TR=O44694 /GB=AAC25876.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 02      6grp_cgc > 65      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 251
1 2 3 4 range
A 47.3
(-2.5)
P 		71.1
(-1.7)
P 		34.8
(-3)
A 		201.3
(3)
P 		167
B 59.4
(-1.5)
P 		7.5
(-3)
A 		78.1
(-0.9)
A 		210.6
(3)
P 		203
C 4.1
(-3)
A 		48.3
(-1.9)
A 		24.4
(-2.5)
A 		255.3
(3)
P 		251
avr 36.9
(-3) 		42.3
(-2.8) 		45.8
(-2.7) 		222.4
(3) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 46.8
(-0.9)
A 		61.2
(0.9)
A 		60.2
(0.8)
A 		30.5
(-3)
A 		77.9
(3)
M 		67.1
(1.6)
P 		47
B 39.1
(-3)
P 		51.4
(-1.1)
P 		58.7
(0.1)
A 		51
(-1.1)
A 		57.9
(-0.1)
P 		77.5
(3)
P 		38
C 20.2
(-3)
A 		66.1
(3)
P 		40.8
(-0.3)
A 		53
(1.3)
A 		37.1
(-0.8)
A 		47.3
(0.5)
A 		46
avr 35.4
(-3) 		59.6
(2.1) 		53.2
(0.7) 		44.8
(-1) 		57.6
(1.7) 		64
(3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 17.2
(-0.6)
P 		15.4
(-1.1)
P 		9.1
(-3)
A 		29.5
(3)
P 		20
B 19
(-0.6)
P 		1.9
(-3)
A 		18.1
(-0.7)
A 		44.9
(3)
P 		43
C 1.4
(-3)
A 		13.9
(-1.2)
A 		8.5
(-2)
A 		43
(3)
P 		42
avr 12.5
(-2.6) 		10.4
(-3) 		11.9
(-2.7) 		39.1
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 8.6
(-2.7)
A 		21.7
(2.3)
A 		13.1
(-0.9)
A 		7.7
(-3)
A 		23.5
(3)
M 		16.3
(0.3)
P 		16
B 13.6
(-3)
P 		17.1
(-1.6)
P 		14.3
(-2.7)
A 		13.5
(-3)
A 		23.5
(0.9)
P 		28.9
(3)
P 		15
C 7.5
(-3)
A 		20.2
(3)
P 		10.4
(-1.6)
A 		10.7
(-1.5)
A 		12
(-0.9)
A 		15.8
(0.9)
A 		13
avr 9.9
(-3) 		19.7
(2.7) 		12.6
(-1.4) 		10.6
(-2.6) 		19.7
(2.7) 		20.3
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185636_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15849
Sequence Type Exemplar sequence
Representative Public ID C45H4.10 NCBI
Target Description C45H4.10 /REP_DB=WormBase Gene ID /WP=CE08743 /TR=O44694 /GB=AAC25876.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071181(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071181 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-24) (srbc-24) mRNA, complete cds. 11/11 None
GENEFINDER00000009351 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2151590:2152838:1 11/11 None
C45H4.10 ENSEMBL cdna:known chromosome:CEL140:V:2151590:2152838:1 gene:C45H4.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009341 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2151589-2152838(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-24
Ensembl C45H4.10
Entrez Gene 183491 Entrez gene
SwissProt O44694 EMBL-EBI
WormBase CE08743 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC25876 Serpentine receptor, class bc (class b-like) protein 24 [Caenorhabditis elegans] ref|NP_503582.1| Serpentine Receptor, class BC (class B-like) family member (srbc-24) [Caenorhabditis elegans] 1.0E-159
blast AAC25873 Serpentine receptor, class bc (class b-like) protein 22 [Caenorhabditis elegans] 3.0E-60
blast NP_503585 Serpentine Receptor, class BC (class B-like) family member (srbc-22) [Caenorhabditis elegans] 1.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 8.2E-101
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503582.1 5 10-32,45-67,77-96,117-139,180-202
C45H4.10 5 10-32,45-67,77-96,117-139,180-202
GENEFINDER00000009351 5 10-32,45-67,77-96,117-139,180-202
Sequence
Target Sequence 
>C. ELEGANS:185636_AT
atagagttgtggcagtctacaccccaatctggttcctcaactatcgttctctcgtcgcaa
attctgcagttctaggcttaacagctgctttcgggctctctgaatatccagttttgtata
tattctgtgagtttgaagttgatatccctccaaaatgtgtatcgattaattgtgctctaa
acgattgttttctgcaatattggaccacttataagatgataatcttcgcttgtacattta
ttttcacgattcttctatcattaaaactaatcagtaaaattttcaaagatgataacaagg
acttgaatagagcaaaccgtctgaccctcatcgattccacaataatattcgccactgatt
ttctgccgactatgctctgcctaatgggccacgaggacctgttcaacactcaaaacatgg
gtccatttggagcagttttgaagcaagtcggatgtgcttttgaggctctgcttgttttgc
aaacaattacccgccggaatgaaacgactgtgaacagttcgagaaccagcaaaaccaacg
tctcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAGAGTTGTGGCAGTCTACACCCC 646 19 335 Antisense
GTTCTCTCGTCGCAAATTCTGCAGT 404 443 380 Antisense
TAGGCTTAACAGCTGCTTTCGGGCT 414 651 407 Antisense
CTTTCGGGCTCTCTGAATATCCAGT 552 223 422 Antisense
AATAGAGCAAACCGTCTGACCCTCA 85 173 640 Antisense
ATATTCGCCACTGATTTTCTGCCGA 175 19 679 Antisense
GCCGACTATGCTCTGCCTAATGGGC 266 285 699 Antisense
TAATGGGCCACGAGGACCTGTTCAA 243 633 716 Antisense
GTCGGATGTGCTTTTGAGGCTCTGC 113 473 781 Antisense
ATTACCCGCCGGAATGAAACGACTG 578 11 820 Antisense
GAACCAGCAAAACCAACGTCTCAAT 572 345 857 Antisense
Sequence Source Affymetrix Proprietary Database