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[185634_at]

Description R09F10.3 /REP_DB=WormBase Gene ID /WP=CE07437 /TR=Q23026 /GB=AAC69092.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 52      4grp_high_8_8 > 25      6grp_highest_nonorm > 81      6grp_total > 39      4grp_total > 39      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 308.3
(3)
P 		192.6
(-3)
P 		206.9
(-2.3)
P 		250.7
(0)
P 		116
B 247.7
(3)
P 		233.1
(1.7)
P 		180.1
(-3)
P 		226.6
(1.1)
P 		68
C 239.6
(3)
P 		210.9
(-1)
P 		235.7
(2.5)
P 		196.7
(-3)
P 		43
avr 265.2
(3) 		212.2
(-2.5) 		207.6
(-3) 		224.7
(-1.2) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 326.1
(3)
P 		257.6
(-0.5)
P 		210.2
(-3)
P 		272.8
(0.2)
P 		260
(-0.4)
P 		282.8
(0.8)
P 		116
B 373
(3)
P 		279.8
(-1.1)
P 		237.1
(-3)
P 		335.8
(1.4)
P 		333.4
(1.3)
P 		291.7
(-0.6)
P 		136
C 318.5
(1.7)
P 		348
(3)
P 		213.9
(-3)
P 		258.6
(-1)
P 		270.7
(-0.5)
P 		315.9
(1.6)
P 		134
avr 339.2
(3) 		295.1
(0.8) 		220.4
(-3) 		289.1
(0.5) 		288
(0.4) 		296.8
(0.9) 		119
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 112.3
(3)
P 		41.8
(-2.6)
P 		54.1
(-1.6)
P 		36.7
(-3)
P 		76
B 79
(3)
P 		57.6
(-0.4)
P 		41.7
(-3)
P 		48.3
(-1.9)
P 		37
C 79.3
(2.7)
P 		60.6
(0.4)
P 		82.1
(3)
P 		33.2
(-3)
P 		49
avr 90.2
(3) 		53.3
(-1.4) 		59.3
(-0.6) 		39.4
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 60.1
(-1.1)
P 		91.6
(3)
P 		45.8
(-3)
P 		69.2
(0.1)
P 		78.4
(1.3)
P 		68.9
(0)
P 		46
B 129.8
(2.6)
P 		93.1
(-0.3)
P 		57.6
(-3)
P 		88.9
(-0.6)
P 		135.5
(3)
P 		108.8
(0.9)
P 		78
C 118
(3)
P 		106.2
(1.9)
P 		54.4
(-2.8)
P 		52
(-3)
P 		87.6
(0.2)
P 		105.8
(1.9)
P 		66
avr 102.6
(3) 		97
(2.3) 		52.6
(-3) 		70
(-0.9) 		100.5
(2.7) 		94.5
(2) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185634_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16425
Sequence Type Exemplar sequence
Representative Public ID R09F10.3 NCBI
Target Description R09F10.3 /REP_DB=WormBase Gene ID /WP=CE07437 /TR=Q23026 /GB=AAC69092.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077000(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077000 NCBI Caenorhabditis elegans R09F10.3 (R09F10.3) mRNA, complete cds. 11/11 None
GENEFINDER00000002579 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8294686:8296325:1 11/11 None
SNAP00000002569 ENSEMBL cdna:SNAP chromosome:CEL140:X:8295072:8296325:1 11/11 None
R09F10.3.2 ENSEMBL cdna:known chromosome:CEL140:X:8294560:8296601:1 gene:R09F10.3 11/11 A 
R09F10.3.3 ENSEMBL cdna:known chromosome:CEL140:X:8294562:8296735:1 gene:R09F10.3 11/11 None
R09F10.3.1 ENSEMBL cdna:known chromosome:CEL140:X:8294562:8296601:1 gene:R09F10.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8294560-8296388(+) 93.89 100.0
Public Domain and Genome References
Gene Title
Ensembl R09F10.3
Entrez Gene 181085 Entrez gene
SwissProt Q23026 EMBL-EBI
WormBase CE33810 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509401 R09F10.3 [Caenorhabditis elegans] gb|AAC69092.2| Hypothetical protein R09F10.3 [Caenorhabditis elegans] 0.0
blast NP_509401 R09F10.3 [Caenorhabditis elegans] gb|AAC69092.2| Hypothetical protein R09F10.3 [Caenorhabditis elegans] 1.0E-180
blast CAE74872 Hypothetical protein CBG22731 [Caenorhabditis briggsae] 1.0E-106
Sequence
Target Sequence 
>C. ELEGANS:185634_AT
gaacagagactagttccaccggcaatgttccattcgcaggcaacaaattcgcatgcagcc
tttgagcatgcattcaatggattgagaaaggaaattgccaataagtcacttggaatctat
ccgaaggtcctgcagcgaaccacttgcagtcttatcattgaatttctatttggatgcggt
ggagcaaaacctggcgaaaaaaatactgataaggagattgtgtatacaatcaaatttctg
attattgagcggaacggaagcattgaatacatcaacatcatggctccaactgaggattgg
catatggtcaacgattatgcgattccaacgatcaatccatttgcaccatctcgctatgaa
gtttatcgtcgcctaacaaagcaagccaatattcatctgttcaattgtttcgctcagaat
cgatggactgctggcacgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACAGAGACTAGTTCCACCGGCAA 55 353 826 Antisense
GCAATGTTCCATTCGCAGGCAACAA 656 321 847 Antisense
CAAATTCGCATGCAGCCTTTGAGCA 533 193 869 Antisense
TATCCGAAGGTCCTGCAGCGAACCA 465 657 943 Antisense
AGCGAACCACTTGCAGTCTTATCAT 52 83 959 Antisense
TACATCAACATCATGGCTCCAACTG 238 643 1093 Antisense
GGTCAACGATTATGCGATTCCAACG 127 503 1131 Antisense
ACGATCAATCCATTTGCACCATCTC 624 93 1153 Antisense
CTCGCTATGAAGTTTATCGTCGCCT 341 233 1175 Antisense
TTCATCTGTTCAATTGTTTCGCTCA 440 689 1217 Antisense
AGAATCGATGGACTGCTGGCACGCT 531 75 1241 Antisense
Sequence Source Affymetrix Proprietary Database