[Home] | [Total List]

[185633_at]

Description F35H10.6 /REP_DB=WormBase Gene ID /WP=CE04506 /TR=Q20070 /GB=AAA81680.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 53      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 73      6grp_total > 54      4grp_total > 11      6grp_high1_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 330
1 2 3 4 range
A 447
(0.5)
P 		522.3
(3)
P 		339
(-3)
P 		457.3
(0.9)
P 		183
B 388.2
(-2.1)
P 		363.5
(-3)
P 		463
(0.6)
P 		530.6
(3)
P 		167
C 446.2
(-2.3)
P 		415.5
(-3)
P 		437
(-2.5)
P 		669.1
(3)
P 		254
avr 427.1
(-2.4) 		433.8
(-2.1) 		413
(-3) 		552.3
(3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 532
1 2 3 4 5 6 range
A 409.9
(-2.6)
P 		404.9
(-2.7)
P 		774.7
(3)
P 		431.7
(-2.3)
P 		409.8
(-2.6)
P 		382.7
(-3)
P 		392
B 441.4
(-2.3)
P 		573.5
(-0.5)
P 		818.7
(3)
P 		393.9
(-3)
P 		652.6
(0.7)
P 		550.9
(-0.8)
P 		425
C 323.4
(-2.5)
P 		578.9
(1.3)
P 		286.7
(-3)
P 		547.9
(0.9)
P 		463.3
(-0.4)
P 		692.6
(3)
P 		406
avr 391.6
(-3) 		519.1
(0.3) 		626.7
(3) 		457.8
(-1.3) 		508.6
(-0) 		542.1
(0.8) 		235
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 162.7
(3)
P 		113.4
(-0.1)
P 		88.6
(-1.6)
P 		66.9
(-3)
P 		96
B 123.8
(3)
P 		89.8
(-3)
P 		107.3
(0.1)
P 		113.1
(1.1)
P 		34
C 147.7
(2.3)
P 		119.5
(-2)
P 		152.3
(3)
P 		112.8
(-3)
P 		40
avr 144.7
(3) 		107.6
(-1.7) 		116.1
(-0.6) 		97.6
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 75.6
(-3)
P 		144
(1.4)
P 		168.7
(3)
P 		109.5
(-0.8)
P 		123.6
(0.1)
P 		93.2
(-1.9)
P 		93
B 153.6
(-1.2)
P 		190.9
(0.2)
P 		198.8
(0.5)
P 		104.3
(-3)
P 		265.2
(3)
P 		205.4
(0.8)
P 		161
C 119.9
(-1.2)
P 		176.6
(0.9)
P 		73
(-3)
P 		110.2
(-1.6)
P 		149.9
(-0.1)
P 		231.8
(3)
P 		159
avr 116.4
(-2.3) 		170.5
(2.2) 		146.8
(0.3) 		108
(-3) 		179.6
(3) 		176.8
(2.8) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185633_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9260
Sequence Type Exemplar sequence
Representative Public ID F35H10.6 NCBI
Target Description F35H10.6 /REP_DB=WormBase Gene ID /WP=CE04506 /TR=Q20070 /GB=AAA81680.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068996(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068996 NCBI Caenorhabditis elegans F35H10.6 (F35H10.6) mRNA, complete cds. 10/11 None
SNAP00000039424 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8299908:8300533:1 10/11 None
GENEFINDER00000039439 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8299908:8300533:1 10/11 None
F35H10.6 ENSEMBL cdna:known chromosome:CEL140:IV:8299802:8300932:1 gene:F35H10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8299807-8300539(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35H10.6
Entrez Gene 177625 Entrez gene
SwissProt Q20070 EMBL-EBI
WormBase CE38515 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81680 Hypothetical protein F35H10.6 [Caenorhabditis elegans] ref|NP_501397.2| F35H10.6 [Caenorhabditis elegans] 9.0E-87
blast AAA81680 Hypothetical protein F35H10.6 [Caenorhabditis elegans] ref|NP_501397.2| F35H10.6 [Caenorhabditis elegans] 1.0E-86
blast CAE58452 Hypothetical protein CBG01589 [Caenorhabditis briggsae] 9.0E-58
blast CAE58452 Hypothetical protein CBG01589 [Caenorhabditis briggsae] 1.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR004127 EMBL-EBI Putative prefoldin chaperone 2.0E-36
Pfam IPR004127 EMBL-EBI Putative prefoldin chaperone 2.0E-36
Pfam IPR004127 EMBL-EBI Putative prefoldin chaperone 2.0E-36
Sequence
Target Sequence 
>C. ELEGANS:185633_AT
gcatgattttaccccctatattaaatttgtttttttttctgaaagagctcaaatggaaaa
ctatgtctctgcacaggaaagatacatgaagtatttggaagatttgtcagaaaatgttat
tcatcctaaaattgcaactgaggagaaggaattcaaaaagttgcaaaaacagtgcgagga
gtatgcaaaactcaagttcacatgtcaacggcttctgaatgaggctccaaaaacaacaga
aggaaagaccgaactgggacagagagtttttatgaatattgaagtgagagacacgaagca
tgtggttgttaagctgtgtgacgatgtttatgtggagatgaagcttcaagacgctatcaa
aacatgtgatcggaagatggacagcttaaaaaatatgatggaaaaactgcaaaagtcaac
caataaactgaaaaccgacttgacaatgcttcttgccacgatggatatgccatatgtgga
accattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATGATTTTACCCCCTATATTAAA 512 307 18 Antisense
AACTATGTCTCTGCACAGGAAAGAT 613 139 76 Antisense
AACTCAAGTTCACATGTCAACGGCT 619 135 206 Antisense
ATGTCAACGGCTTCTGAATGAGGCT 228 47 219 Antisense
GAAGGAAAGACCGAACTGGGACAGA 74 333 256 Antisense
GCATGTGGTTGTTAAGCTGTGTGAC 292 311 315 Antisense
GCTGTGTGACGATGTTTATGTGGAG 469 295 330 Antisense
GATGAAGCTTCAAGACGCTATCAAA 260 413 354 Antisense
AACCGACTTGACAATGCTTCTTGCC 290 147 450 Antisense
GCTTCTTGCCACGATGGATATGCCA 290 305 465 Antisense
GGATATGCCATATGTGGAACCATTC 168 511 480 Antisense
Sequence Source Affymetrix Proprietary Database