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[185632_at]

Description T03G11.1 /REP_DB=WormBase Gene ID /WP=CE13118 /TR=Q22126 /GB=AAA82452.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 70      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 61      6grp_total > 90      4grp_total > 23      6grp_cgc > 50      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 431
1 2 3 4 range
A 544.1
(3)
P 		135.2
(-2.9)
P 		130.7
(-3)
P 		440.9
(1.5)
P 		413
B 555.1
(3)
P 		208.2
(-2.1)
P 		145
(-3)
P 		427.1
(1.1)
P 		410
C 432.1
(2.9)
P 		187
(-1.8)
P 		124.1
(-3)
P 		436.4
(3)
P 		312
avr 510.4
(3) 		176.8
(-2.3) 		133.3
(-3) 		434.8
(1.8) 		377

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 336
1 2 3 4 5 6 range
A 524
(1.3)
P 		444.8
(-0.3)
P 		325
(-2.7)
P 		606.9
(3)
P 		409.5
(-1)
P 		310.6
(-3)
P 		296
B 384.4
(0.6)
P 		363.5
(-0)
P 		326.1
(-1.2)
P 		458.4
(3)
P 		389.5
(0.8)
P 		271.4
(-3)
P 		187
C 451.3
(1)
P 		428.3
(0.5)
P 		477.2
(1.6)
P 		542
(3)
P 		401.5
(-0.1)
P 		271.3
(-3)
P 		271
avr 453.2
(1) 		412.2
(0.1) 		376.1
(-0.8) 		535.8
(3) 		400.2
(-0.2) 		284.4
(-3) 		251
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 198.1
(3)
P 		29.4
(-3)
P 		34.2
(-2.8)
P 		64.5
(-1.8)
P 		169
B 177
(3)
P 		51.4
(-2.3)
P 		33.6
(-3)
P 		91
(-0.6)
P 		143
C 143
(3)
P 		53.8
(-2.4)
P 		43.2
(-3)
P 		73.6
(-1.2)
P 		100
avr 172.7
(3) 		44.9
(-2.7) 		37
(-3) 		76.4
(-1.3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 96.6
(-1.2)
P 		158.2
(3)
P 		70.8
(-3)
P 		153.9
(2.7)
P 		123.6
(0.6)
P 		75.6
(-2.7)
P 		87
B 133.8
(1.1)
P 		121
(0.2)
P 		79.2
(-3)
P 		121.4
(0.2)
P 		158.2
(3)
P 		101.2
(-1.3)
P 		79
C 167.3
(3)
P 		130.7
(0.1)
P 		121.5
(-0.6)
P 		109
(-1.6)
P 		129.9
(0.1)
P 		90.8
(-3)
P 		77
avr 132.6
(2.4) 		136.6
(2.9) 		90.5
(-2.8) 		128.1
(1.9) 		137.2
(3) 		89.2
(-3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185632_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16219
Sequence Type Exemplar sequence
Representative Public ID T03G11.1 NCBI
Target Description T03G11.1 /REP_DB=WormBase Gene ID /WP=CE13118 /TR=Q22126 /GB=AAA82452.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076482(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076482 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-62) (pqn-62) mRNA, complete cds. 11/11 None
GENEFINDER00000008039 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5199088:5203757:1 11/11 None
SNAP00000008029 ENSEMBL cdna:SNAP chromosome:CEL140:X:5200608:5203757:1 11/11 None
T03G11.1 ENSEMBL cdna:known chromosome:CEL140:X:5197750:5204207:1 gene:T03G11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5197992-5203758(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-62
Ensembl T03G11.1
Entrez Gene 180789 Entrez gene
SwissProt Q22126 EMBL-EBI
WormBase CE31226 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508883 Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-62) [Caenorhabditis elegans] gb|AAA82452.4| Prion-like-(q/n-rich)-domain-bearing protein protein 62 [Caenorhabditis elegans] 0.0
blast CAE68711 Hypothetical protein CBG14636 [Caenorhabditis briggsae] 0.0
blast CAE68711 Hypothetical protein CBG14636 [Caenorhabditis briggsae] 1.0E-149
blast CAE68711 Hypothetical protein CBG14636 [Caenorhabditis briggsae] 1.0E-136
Protein Domains
Database ID Description E-Value
Pfam IPR003034 EMBL-EBI DNA-binding SAP 1.0E-4
Pfam IPR003034 EMBL-EBI DNA-binding SAP 7.1E-4
Sequence
Target Sequence 
>C. ELEGANS:185632_AT
tatcttctccaatgcgcacacaaagccaaaacagcgtacaatcagtgttttctgatggct
cttacagcagaaatatggcattccaacaggaaaactcgccacaggaaataacatattcta
tgagcaatggtgctgaatctaatacttctcagcaaaatgagtcacctcttcaaaactccc
aacattcagaggttgtaagcaaacagtccgatattgtggaaattctaccacagtttgatc
aaaatgtgatgaaccatgacgtgaatcaattccatagcaacatgatttataatgaagatt
cgaatcaagaatttattgctcaaaacagtcaaacgcatgatcttgatttcgacttcccag
acattgatcaaatggtcgctaatattcgagattccgatcctctgagctgcccactagacg
atattgatttgactgcaattttgaatagctggaccgagacttccgatccaaaacagcagc
atacatctgctgatatgaacatgtgtgatgacttggtgtatgatggatcacaaatgatca
atcaggatatgaactggaatgactatgaccctcaatcaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCTTCTCCAATGCGCACACAAAG 347 659 3014 Antisense
GTGTTTTCTGATGGCTCTTACAGCA 69 487 3058 Antisense
TTCCAACAGGAAAACTCGCCACAGG 78 699 3094 Antisense
TGAGTCACCTCTTCAAAACTCCCAA 369 567 3171 Antisense
GGAAATTCTACCACAGTTTGATCAA 396 527 3231 Antisense
TTGATTTCGACTTCCCAGACATTGA 27 699 3356 Antisense
ATATTCGAGATTCCGATCCTCTGAG 482 19 3395 Antisense
GAGCTGCCCACTAGACGATATTGAT 574 387 3417 Antisense
AATAGCTGGACCGAGACTTCCGATC 267 173 3457 Antisense
ACTTCCGATCCAAAACAGCAGCATA 692 103 3472 Antisense
GAATGACTATGACCCTCAATCAAAC 678 329 3570 Antisense
Sequence Source Affymetrix Proprietary Database