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[185630_at]

Description C39D10.6 /REP_DB=WormBase Gene ID /WP=CE04185 /TR=Q18527 /GB=AAK39208.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 70      6grp_total > 06      4grp_total > 46      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 424
1 2 3 4 range
A 592.6
(3)
P 		231.1
(-3)
P 		258.1
(-2.6)
P 		260.2
(-2.5)
P 		362
B 298.9
(2.7)
P 		306.7
(3)
P 		168.9
(-3)
P 		269.6
(1.4)
P 		138
C 584.1
(3)
P 		341.8
(-1.1)
P 		260.3
(-2.4)
P 		226.5
(-3)
P 		358
avr 491.9
(3) 		293.2
(-1.5) 		229.1
(-3) 		252.1
(-2.5) 		263

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 413
1 2 3 4 5 6 range
A 514.6
(3)
P 		353.4
(0)
P 		270.3
(-1.5)
P 		238.9
(-2.1)
P 		232
(-2.3)
P 		191.7
(-3)
P 		323
B 575.7
(3)
P 		305.2
(-0.9)
P 		232.6
(-2)
P 		269
(-1.5)
P 		256
(-1.6)
P 		163
(-3)
P 		413
C 457.9
(3)
P 		399.1
(1.6)
P 		252.8
(-2.1)
P 		233.1
(-2.5)
P 		245.5
(-2.2)
P 		214.3
(-3)
P 		244
avr 516.1
(3) 		352.6
(-0) 		251.9
(-1.9) 		247
(-1.9) 		244.5
(-2) 		189.7
(-3) 		326
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 215.8
(3)
P 		50.2
(-2.6)
P 		67.5
(-2)
P 		38.1
(-3)
P 		178
B 95.3
(3)
P 		75.7
(0.9)
P 		39.1
(-3)
P 		57.4
(-1)
P 		56
C 193.4
(3)
P 		98.3
(-0.7)
P 		90.7
(-1)
P 		38.2
(-3)
P 		155
avr 168.2
(3) 		74.7
(-1.5) 		65.8
(-2) 		44.6
(-3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 94.9
(0.7)
P 		125.7
(3)
P 		58.9
(-2.1)
P 		60.6
(-1.9)
P 		70
(-1.2)
P 		46.7
(-3)
P 		79
B 200.3
(3)
P 		101.6
(-1.1)
P 		56.5
(-3)
P 		71.2
(-2.4)
P 		104
(-1)
P 		60.8
(-2.8)
P 		144
C 169.7
(3)
P 		121.8
(0.7)
P 		64.4
(-2.1)
P 		46.9
(-3)
P 		79.4
(-1.4)
P 		71.8
(-1.8)
P 		123
avr 155
(3) 		116.4
(0.6) 		59.9
(-3) 		59.6
(-3) 		84.5
(-1.4) 		59.8
(-3) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185630_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16183
Sequence Type Exemplar sequence
Representative Public ID C39D10.6 NCBI
Target Description C39D10.6 /REP_DB=WormBase Gene ID /WP=CE04185 /TR=Q18527 /GB=AAK39208.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076931(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076931 NCBI Caenorhabditis elegans C39D10.6 (C39D10.6) mRNA, complete cds. 9/11 None
GENEFINDER00000015644 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7895650:7897690:-1 11/11 None
C39D10.6 ENSEMBL cdna:known chromosome:CEL140:X:7896234:7897690:-1 gene:C39D10.6 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015637 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7896232-7897689(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C39D10.6
Entrez Gene 183338 Entrez gene
SwissProt Q18527 EMBL-EBI
WormBase CE35425 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39208 Hypothetical protein C39D10.6 [Caenorhabditis elegans] ref|NP_509332.2| C39D10.6 [Caenorhabditis elegans] 2.0E-98
blast AAK39208 Hypothetical protein C39D10.6 [Caenorhabditis elegans] ref|NP_509332.2| C39D10.6 [Caenorhabditis elegans] 2.0E-96
blast CAE70317 Hypothetical protein CBG16844 [Caenorhabditis briggsae] 6.0E-55
blast CAE70317 Hypothetical protein CBG16844 [Caenorhabditis briggsae] 1.0E-54
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509332.2 4 49-66,73-95,105-127,157-179
C39D10.6 4 49-66,73-95,105-127,157-179
GENEFINDER00000015644 4 49-66,73-95,117-139,169-191
Sequence
Target Sequence 
>C. ELEGANS:185630_AT
tcagttttaccagaagctccacagtctttgtatatacttgtatgagcactgcattttcaa
ttgtcatatttggaagtctgctctttggcgtgtggaaggaaaagcgactttatttatatc
catatctatttttccagtcactgaaagtacctaactctcttgttttgtttcaggtcatat
ccattgcaatttctataatagttctgttcattttcctcatctcaattgcagtcggtgcga
gtatggtaattgatttagctagaaacgttggaaatgtcgatacagcaagtgtacaggaga
aacttgatgctgatttggcacttttcacagttcttttcatactgttcctttgcttgggag
ggttgattcaagcgtattttgctgaggtgatctattctttccacaacttcctgaaagacc
gcgagaactcattttccttccactttgaatcttattcaaatagtgcctttggatcggaag
ccactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGTTTTACCAGAAGCTCCACAGT 220 623 203 Antisense
GAGCACTGCATTTTCAATTGTCATA 629 389 246 Antisense
TCCATATCTATTTTTCCAGTCACTG 673 589 321 Antisense
GAAAGTACCTAACTCTCTTGTTTTG 140 361 345 Antisense
TCCTCATCTCAATTGCAGTCGGTGC 40 593 416 Antisense
GATTTGGCACTTTTCACAGTTCTTT 521 427 514 Antisense
AGTTCTTTTCATACTGTTCCTTTGC 163 65 531 Antisense
GTGATCTATTCTTTCCACAACTTCC 90 485 589 Antisense
AAGACCGCGAGAACTCATTTTCCTT 677 151 617 Antisense
ATTTTCCTTCCACTTTGAATCTTAT 582 13 633 Antisense
AGTGCCTTTGGATCGGAAGCCACTC 249 59 664 Antisense
Sequence Source Affymetrix Proprietary Database