[Home] | [Total List]

[185627_at]

Description C24D10.1 /REP_DB=WormBase Gene ID /WP=CE16874 /TR=O44136 /GB=AAB88314.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 33      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 7.8
(-3)
A 		27.3
(0.3)
A 		22.2
(-0.6)
A 		43.6
(3)
A 		36
B 24.4
(0.2)
A 		36
(3)
A 		21.7
(-0.4)
A 		10.9
(-3)
A 		25
C 6
(-3)
A 		23.3
(1.1)
A 		26.5
(1.8)
A 		31.6
(3)
A 		26
avr 12.7
(-3) 		28.9
(3) 		23.5
(1) 		28.7
(2.9) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 7.2
(-2.6)
A 		2.6
(-3)
A 		25.3
(-0.9)
A 		32.1
(-0.3)
A 		30.2
(-0.5)
A 		67.9
(3)
P 		65
B 5.2
(-2.9)
A 		32.2
(-0)
A 		3.9
(-3)
A 		19.9
(-1.3)
A 		61.1
(3)
A 		55
(2.4)
P 		57
C 21.7
(-1.2)
A 		32.6
(0)
A 		4.4
(-3)
A 		5
(-2.9)
A 		39.3
(0.7)
A 		60.8
(3)
P 		56
avr 11.4
(-3) 		22.5
(-1.6) 		11.2
(-3) 		19
(-2.1) 		43.5
(0.9) 		61.2
(3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.8
(-3)
A 		5.9
(2.2)
A 		5.8
(2)
A 		6.4
(3)
A 		4
B 7.8
(2)
A 		8.9
(3)
A 		5
(-0.5)
A 		2.3
(-3)
A 		7
C 2
(-3)
A 		6.7
(0.9)
A 		9.2
(3)
A 		5.3
(-0.3)
A 		7
avr 4.2
(-3) 		7.2
(3) 		6.7
(2) 		4.7
(-2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 1.3
(-2.8)
A 		0.9
(-3)
A 		5.5
(-1.2)
A 		8.1
(-0.2)
A 		9.1
(0.2)
A 		16.5
(3)
P 		16
B 1.8
(-2.8)
A 		10.7
(-0.5)
A 		0.9
(-3)
A 		5.3
(-1.9)
A 		24.8
(3)
A 		20.5
(1.9)
P 		24
C 8
(-0.8)
A 		9.9
(-0.2)
A 		1.1
(-3)
A 		1
(-3)
A 		12.7
(0.6)
A 		20.4
(3)
P 		19
avr 3.7
(-2.6) 		7.2
(-1.3) 		2.5
(-3) 		4.8
(-2.2) 		15.5
(1.7) 		19.1
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185627_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11138
Sequence Type Exemplar sequence
Representative Public ID C24D10.1 NCBI
Target Description C24D10.1 /REP_DB=WormBase Gene ID /WP=CE16874 /TR=O44136 /GB=AAB88314.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068332(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068332 NCBI Caenorhabditis elegans C24D10.1 (C24D10.1) mRNA, complete cds. 11/11 None
SNAP00000024209 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5166421:5168355:1 11/11 None
GENEFINDER00000024218 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5166421:5168355:1 11/11 None
C24D10.1 ENSEMBL cdna:known chromosome:CEL140:IV:5166355:5168417:1 gene:C24D10.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058368 1/11 Cross Hyb Matching Probes A 
SNAP00000022328 1/11 Cross Hyb Matching Probes None
GENEFINDER00000022380 1/11 Cross Hyb Matching Probes None
Y18H1A.1 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5166372-5168361(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C24D10.1
Entrez Gene 177291 Entrez gene
SwissProt O44136 EMBL-EBI
WormBase CE34705 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB88314 Hypothetical protein C24D10.1 [Caenorhabditis elegans] ref|NP_500733.2| C24D10.1 [Caenorhabditis elegans] 0.0
blast CAB16508 Hypothetical protein Y57G11C.6 [Caenorhabditis elegans] ref|NP_502779.1| Y57G11C.6 [Caenorhabditis elegans] 0.0
blast NP_490769 Y18H1A.1 [Caenorhabditis elegans] gb|AAK21505.1| Hypothetical protein Y18H1A.1 [Caenorhabditis elegans] 1.0E-174
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 9.4E-22
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 9.4E-22
Sequence
Target Sequence 
>C. ELEGANS:185627_AT
ggagatgagcccatcgagttcttccctaagaaggctgaggattacaagaactatggccag
atgtggatcaataaccggaaggtggaacatgtcattgatgaagtgtttcgtttttcaatc
gaagttttgccacacggatgctccaactcgattatctgcaatgtgactgtttttggtaat
tggaaagtggacagtgttcctgtgaaacaagcaattgccatcaaagaagcacttggtcta
aactacttcttgctgaaaacacccgctgacgacaatgcaatgataatttcaccgcatgga
gctggacgagctggatactttttggcactggcagttgctgttcacacaattgatacaaag
attgccgaaccaaacattgcagacattgtcaaatcgattcgcacccagagaccaagagct
gttgattcattctgccagtactgttccctctacatttcattgctatacttcatcaagaaa
aaagtgacaaaaccagcagacggagataagaagtcaacaccgactaacaaatacctcttc
aaaaagtcggttgagttgacaaagcagttcacaaatgttcttctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGATGAGCCCATCGAGTTCTTCC 669 517 1084 Antisense
GAGTTCTTCCCTAAGAAGGCTGAGG 548 395 1099 Antisense
GATTATCTGCAATGTGACTGTTTTT 478 429 1233 Antisense
CTTGGTCTAAACTACTTCTTGCTGA 651 217 1315 Antisense
AAACACCCGCTGACGACAATGCAAT 189 127 1340 Antisense
AATTTCACCGCATGGAGCTGGACGA 445 173 1368 Antisense
GATTGCCGAACCAAACATTGCAGAC 293 433 1443 Antisense
GACCAAGAGCTGTTGATTCATTCTG 657 383 1493 Antisense
GATTCATTCTGCCAGTACTGTTCCC 606 431 1507 Antisense
TTCCCTCTACATTTCATTGCTATAC 428 697 1527 Antisense
AAGCAGTTCACAAATGTTCTTCTCG 617 151 1645 Antisense
Sequence Source Affymetrix Proprietary Database