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[185626_at] 7TM chemoreceptor, srw family

Description Y46H3C.2 /REP_DB=WormBase Gene ID /WP=CE24313 /TR=Q9N4V9 /GB=AAF60624.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 26      6grp_cgc > 07      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.2
(-3)
A 		2.5
(2.6)
A 		2.3
(1.7)
A 		2.6
(3)
A 		1
B 2
(-3)
A 		3.4
(0.4)
A 		2.8
(-1.1)
A 		4.5
(3)
A 		3
C 1.4
(-2.9)
A 		7
(2.5)
A 		1.3
(-3)
A 		7.5
(3)
A 		6
avr 1.5
(-3) 		4.3
(1.9) 		2.1
(-1.9) 		4.9
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 2.9
(-1.2)
A 		1.2
(-3)
A 		1.8
(-2.4)
A 		1.7
(-2.5)
A 		2.8
(-1.3)
A 		7
(3)
A 		6
B 3.7
(3)
A 		1.1
(-2.8)
A 		1.9
(-1)
A 		2.7
(0.8)
A 		1.9
(-1)
A 		1
(-3)
A 		3
C 2.9
(2.1)
A 		3.2
(3)
A 		3.1
(2.7)
A 		2.2
(-0.2)
A 		1.6
(-2.1)
A 		1.3
(-3)
A 		2
avr 3.2
(3) 		1.8
(-3) 		2.3
(-0.9) 		2.2
(-1.3) 		2.1
(-1.7) 		3.1
(2.6) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.4
(-3)
A 		0.5
(0)
A 		0.6
(3)
A 		0.4
(-3)
A 		0
B 0.6
(-3)
A 		0.8
(0)
A 		0.6
(-3)
A 		1
(3)
A 		0
C 0.5
(-3)
A 		2
(3)
A 		0.5
(-3)
A 		1.3
(0.2)
A 		2
avr 0.5
(-3) 		1.1
(3) 		0.6
(-2) 		0.9
(1) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.5
(-2.5)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.9
(-0.7)
A 		1.7
(3)
A 		1
B 1.3
(3)
A 		0.4
(-3)
A 		0.5
(-2.3)
A 		0.7
(-1)
A 		0.8
(-0.3)
A 		0.4
(-3)
A 		1
C 1.1
(3)
A 		1
(2.1)
A 		0.8
(0.4)
A 		0.4
(-3)
A 		0.5
(-2.1)
A 		0.4
(-3)
A 		1
avr 1
(3) 		0.6
(-1.8) 		0.6
(-1.8) 		0.5
(-3) 		0.7
(-0.6) 		0.8
(0.6) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185626_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15492
Sequence Type Exemplar sequence
Representative Public ID Y46H3C.2 NCBI
Target Description Y46H3C.2 /REP_DB=WormBase Gene ID /WP=CE24313 /TR=Q9N4V9 /GB=AAF60624.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071086(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071086 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-99) (srw-99) mRNA, complete cds. 11/11 None
GENEFINDER00000038933 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1707829:1715228:1 11/11 None
Y46H3C.2 ENSEMBL cdna:known chromosome:CEL140:V:1708570:1710492:1 gene:Y46H3C.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1708569-1710492(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-99
Ensembl Y46H3C.2
Entrez Gene 189965 Entrez gene
SwissProt Q9N4V9 EMBL-EBI
WormBase CE24313 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60624 Serpentine receptor, class w protein 99 [Caenorhabditis elegans] ref|NP_503487.1| Serpentine Receptor, class W family member (srw-99) [Caenorhabditis elegans] 0.0
blast AAF60623 Serpentine receptor, class w protein 100 [Caenorhabditis elegans] ref|NP_503488.1| Serpentine Receptor, class W family member (srw-100) [Caenorhabditis elegans] 0.0
blast AAP40514 Serpentine receptor, class w protein 103 [Caenorhabditis elegans] ref|NP_503489.2| Serpentine Receptor, class W family member (srw-103) [Caenorhabditis elegans] 1.0E-107
blast AAP40514 Serpentine receptor, class w protein 103 [Caenorhabditis elegans] ref|NP_503489.2| Serpentine Receptor, class W family member (srw-103) [Caenorhabditis elegans] 4.0E-88
blast CAE70992 Hypothetical protein CBG17824 [Caenorhabditis briggsae] 4.0E-83
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503487.1 5 20-42,54-73,141-160,266-288,303-325
Y46H3C.2 5 20-42,54-73,141-160,266-288,303-325
GENEFINDER00000038933 11 20-42,54-73,141-160,266-288,303-325,398-420,482-504,524-546,593-615,635-657,677-699
Sequence
Target Sequence 
>C. ELEGANS:185626_AT
tcaatgcgttagcgcgacgctttctctagtttatcagttgagatttcaagttctcgagga
cagaacaattccgctgccaattagctgcgccgaatttcaagacataaacaacgcatccaa
atatacattgtcactgataccattgtttcaaaataataatcaacttgttctccgattatt
ttacttggttaatggcttagtaacaagggatcttccatgtggtgcctttccaatcctcac
atttttcctgctccgtgagctcagaaaaacaaagaaacttgataaggtatcacatcgtag
caatactattgatagatccgaagcacgccacaaaaccacaaaatgcattgtttttatgac
gaatgcgtattttatcgctgaagctccgatgggcattattagtctggtcaaggtgttttt
caatacggatgatcgtgtttatttgatctctgttgatttggtaatatatttcacactttt
gttaaccatcaattccatctgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATGCGTTAGCGCGACGCTTTCT 269 633 459 Antisense
GACGCTTTCTCTAGTTTATCAGTTG 619 379 474 Antisense
AGAACAATTCCGCTGCCAATTAGCT 83 71 520 Antisense
TTAGCTGCGCCGAATTTCAAGACAT 624 681 539 Antisense
ACATTGTCACTGATACCATTGTTTC 195 105 583 Antisense
TCAACTTGTTCTCCGATTATTTTAC 48 631 618 Antisense
AAGGGATCTTCCATGTGGTGCCTTT 309 159 663 Antisense
TTTTTCCTGCTCCGTGAGCTCAGAA 707 673 700 Antisense
TAGATCCGAAGCACGCCACAAAACC 361 651 771 Antisense
CGCTGAAGCTCCGATGGGCATTATT 516 255 834 Antisense
TGTTAACCATCAATTCCATCTGCCA 664 561 938 Antisense
Sequence Source Affymetrix Proprietary Database