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[185625_at]

Description ZK1193.5 /REP_DB=WormBase Gene ID /WP=CE28175 /TR=Q23413 /GB=AAA83295.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 364.1
(3)
P 		358.5
(2.7)
A 		261.1
(-3)
A 		341.1
(1.7)
M 		103
B 326.2
(3)
P 		326.2
(3)
A 		309.5
(2)
A 		224.2
(-3)
A 		102
C 421.3
(3)
P 		308.4
(-2.8)
A 		304
(-3)
A 		307.1
(-2.8)
M 		117
avr 370.5
(3) 		331
(0) 		291.5
(-2.9) 		290.8
(-3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 215.6
(-1.9)
A 		369.9
(3)
P 		212.3
(-2)
A 		179.8
(-3)
A 		294
(0.6)
A 		179.7
(-3)
A 		190
B 243.7
(-0.5)
A 		298.4
(2.7)
A 		220.2
(-1.9)
A 		239.4
(-0.7)
A 		304.2
(3)
P 		200.3
(-3)
A 		104
C 275.6
(0.7)
A 		318.2
(3)
A 		217.1
(-2.4)
A 		247.5
(-0.8)
P 		296.6
(1.8)
A 		206
(-3)
A 		112
avr 245
(-0.8) 		328.8
(3) 		216.5
(-2) 		222.2
(-1.8) 		298.3
(1.6) 		195.3
(-3) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 132.6
(3)
P 		77.8
(-1)
A 		68.3
(-1.7)
A 		49.9
(-3)
M 		83
B 104
(3)
P 		80.6
(0.5)
A 		71.7
(-0.4)
A 		47.8
(-3)
A 		56
C 139.5
(3)
P 		88.7
(-0.5)
A 		106
(0.7)
A 		51.8
(-3)
M 		88
avr 125.4
(3) 		82.4
(-0.4) 		82
(-0.4) 		49.8
(-3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 39.7
(-3)
A 		131.6
(3)
P 		46.2
(-2.6)
A 		45.6
(-2.6)
A 		88.7
(0.2)
A 		43.8
(-2.7)
A 		92
B 84.8
(-0.3)
A 		99.3
(0.9)
A 		53.5
(-3)
A 		63.4
(-2.2)
A 		123.6
(3)
P 		74.7
(-1.2)
A 		70
C 102.2
(3)
A 		97.1
(2.4)
A 		55.3
(-2.4)
A 		49.8
(-3)
P 		96
(2.3)
A 		68.9
(-0.8)
A 		52
avr 75.6
(-0.5) 		109.3
(3) 		51.7
(-3) 		52.9
(-2.9) 		102.8
(2.3) 		62.5
(-1.9) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185625_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18125
Sequence Type Exemplar sequence
Representative Public ID ZK1193.5 NCBI
Target Description ZK1193.5 /REP_DB=WormBase Gene ID /WP=CE28175 /TR=Q23413 /GB=AAA83295.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029815(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029815 NCBI Caenorhabditis elegans ZK1193.5c (ZK1193.5) mRNA, complete cds. 9/11 None
ZK1193.5c ENSEMBL cdna:known chromosome:CEL140:X:427062:429526:-1 gene:ZK1193.5 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029813 6/11 Cross Hyb Matching Probes None
GENEFINDER00000031659 2/11 Cross Hyb Matching Probes None
SNAP00000031653 6/11 Cross Hyb Matching Probes None
GENEFINDER00000031656 6/11 Cross Hyb Matching Probes None
ZK1193.5a 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180398 3 1 NM_001029815 175379_at (11), 185625_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:426717-433794(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK1193.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO91696 Hypothetical protein ZK1193.5c [Caenorhabditis elegans] ref|NP_001024986.1| ZK1193.5c [Caenorhabditis elegans] 1.0E-171
blast AAO91694 Hypothetical protein ZK1193.5a [Caenorhabditis elegans] ref|NP_001024984.1| ZK1193.5a [Caenorhabditis elegans] 1.0E-167
blast T27710 hypothetical protein ZK1193.5 - Caenorhabditis elegans 1.0E-162
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 3.9999998989515E-5
Pfam IPR001356 EMBL-EBI Homeobox 1.9E-4
Sequence
Target Sequence 
>C. ELEGANS:185625_AT
cgagctacccgtcctcgaaaaatggttcgaagagaatcctcacccgacatggatgcaaat
cgatcagtacacacaatgcttgaacaactgcgcttatcgagagaattatccgcatattag
tcagcacaatgtgaagatctggttcaaaaatcgacgtgcaaaatgcaagcgattgttgaa
tggaatgcaggaaaagcttgagcagaagtgccccacaatttctcttcaacgaagagcaaa
atcactacttcatttttcattccagctttgtgcttcagccctttatatgccaaaaacttt
tattcagaattttgacatacaaccacaaaaaaaattttacaaaaaatggtcaatttttta
tttaaaaaattggcacacaaaaataaaaacagacatgattgtaggagaaaattttcagac
ttttcaagaaattataacttttaaaaagctatttttggagaaaaaagctccctattttaa
caataaagttttgagccatttcacgcgtgcaccaaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGCTACCCGTCCTCGAAAAATGG 563 237 1191 Antisense
GGTTCGAAGAGAATCCTCACCCGAC 304 507 1214 Antisense
TCCTCACCCGACATGGATGCAAATC 519 591 1227 Antisense
AATCGATCAGTACACACAATGCTTG 356 169 1248 Antisense
ATGCTTGAACAACTGCGCTTATCGA 447 43 1266 Antisense
GAATTATCCGCATATTAGTCAGCAC 492 325 1293 Antisense
AGCTTGAGCAGAAGTGCCCCACAAT 328 79 1385 Antisense
CCCCACAATTTCTCTTCAACGAAGA 85 261 1401 Antisense
CATTTTTCATTCCAGCTTTGTGCTT 631 215 1441 Antisense
AAAGTTTTGAGCCATTTCACGCGTG 676 121 1675 Antisense
GCCATTTCACGCGTGCACCAAAAAA 460 279 1685 Antisense
Sequence Source Affymetrix Proprietary Database