[Home] | [Total List]

[185624_s_at]

Description T28H11.7 /REP_DB=WormBase Gene ID /WP=CE14380 /TR=Q23061 /GB=AAB04603.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 7.6
(-2.6)
A 		7.4
(-2.6)
A 		2.7
(-3)
A 		72.1
(3)
A 		69
B 12.6
(2.3)
A 		3
(-3)
A 		3.3
(-2.8)
A 		13.9
(3)
A 		11
C 4.9
(-2.8)
A 		4.9
(-2.8)
A 		2.5
(-3)
A 		65.7
(3)
A 		63
avr 8.4
(-2.3) 		5.1
(-2.7) 		2.8
(-3) 		50.6
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 383
1 2 3 4 5 6 range
A 4.1
(-3)
A 		3.7
(-3)
A 		11.6
(-2.9)
A 		49
(-2.3)
A 		238
(0.7)
M 		385.2
(3)
P 		382
B 2.4
(-3)
A 		4.8
(-2.9)
A 		2.2
(-3)
A 		10
(-2.8)
A 		283.7
(3)
P 		268.1
(2.7)
P 		282
C 6.5
(-2.9)
A 		2.5
(-3)
A 		6.4
(-2.9)
A 		46.7
(-1.9)
A 		222.4
(2.6)
P 		240.2
(3)
P 		238
avr 4.3
(-3) 		3.7
(-3) 		6.7
(-2.9) 		35.2
(-2.4) 		248
(2) 		297.8
(3) 		294
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.8
(-1.7)
A 		1.6
(-2.5)
A 		0.7
(-3)
A 		10.6
(3)
A 		10
B 4
(3)
A 		0.7
(-3)
A 		0.8
(-2.8)
A 		3
(1.2)
A 		3
C 1.6
(-2.6)
A 		1.4
(-2.7)
A 		0.9
(-3)
A 		11.1
(3)
A 		10
avr 2.8
(-1.4) 		1.2
(-2.7) 		0.8
(-3) 		8.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.3
(-3)
A 		2.5
(-2.9)
A 		12.4
(-2.2)
A 		71.8
(1.6)
M 		93.8
(3)
P 		93
B 0.8
(-3)
A 		1.6
(-2.9)
A 		0.5
(-3)
A 		2.6
(-2.9)
A 		115.3
(3)
P 		100
(2.2)
P 		115
C 2.4
(-2.9)
A 		0.8
(-3)
A 		1.6
(-2.9)
A 		9.4
(-2.4)
A 		72
(2.4)
P 		80.4
(3)
P 		80
avr 1.3
(-3) 		1.2
(-3) 		1.5
(-3) 		8.1
(-2.5) 		86.4
(2.7) 		91.4
(3) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185624_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11181
Sequence Type Exemplar sequence
Representative Public ID T28H11.7 NCBI
Target Description T28H11.7 /REP_DB=WormBase Gene ID /WP=CE14380 /TR=Q23061 /GB=AAB04603.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068302(11), NM_068711(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068302 NCBI Caenorhabditis elegans T28H11.7 (T28H11.7) mRNA, complete cds. 11/11 None
NM_068711 NCBI Caenorhabditis elegans ZC477.7 (ZC477.7) mRNA, complete cds. 11/11 None
SNAP00000000751 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5015310:5016198:-1 11/11 None
GENEFINDER00000000756 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5015310:5016198:-1 10/11 None
SNAP00000039650 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7110478:7111317:-1 11/11 None
GENEFINDER00000039662 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7110478:7111317:-1 11/11 None
T28H11.7 ENSEMBL cdna:known chromosome:CEL140:IV:5015310:5016248:-1 gene:T28H11.7 11/11 None
ZC477.7 ENSEMBL cdna:known chromosome:CEL140:IV:7110478:7111317:-1 gene:ZC477.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5015315-5016204(-) 100.0 100.0
chrIV:7110483-7111323(-) 97.09 97.09
Public Domain and Genome References
Gene Title

Ensembl T28H11.7
ZC477.7
Entrez Gene 177268 Entrez gene
191182 Entrez gene
SwissProt Q23061 EMBL-EBI
Q23346 EMBL-EBI
WormBase CE14380 Wormbase
CE05063 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04603 Hypothetical protein T28H11.7 [Caenorhabditis elegans] ref|NP_500703.1| T28H11.7 [Caenorhabditis elegans] 1.0E-107
blast AAK19013 Hypothetical protein ZC477.7 [Caenorhabditis elegans] ref|NP_501112.1| ZC477.7 [Caenorhabditis elegans] 1.0E-107
blast AAK19013 Hypothetical protein ZC477.7 [Caenorhabditis elegans] ref|NP_501112.1| ZC477.7 [Caenorhabditis elegans] 1.0E-103
blast AAB04603 Hypothetical protein T28H11.7 [Caenorhabditis elegans] ref|NP_500703.1| T28H11.7 [Caenorhabditis elegans] 1.0E-103
Sequence
Target Sequence 
>C. ELEGANS:185624_S_AT
ggacgtgccaaggcgacaactcttcccgcagaagtggacgatgcgatgggctacttcaaa
aatctgacgccacgtgtcaaggaccttcacaagagcatgacaaacttggaagatattagc
aagtggcagaagaaggccagtttctctggcacccttgagaattactcgcgtctcggtgac
aagatcaatgtgaaaccatttatggatgctgttgatgctagaatgggtgccgaagctgat
gccgtgaaaggggtcctcgcgatttgtgaaaaatacaagtcattctaccaaaacgaggga
aaacttcacgcggacagtatcgccaatttgaataggactcggctcgacatggacagtgcg
gcggataaatatgcgaacaacgagactgaagttaacaagactcgtttggataacagtacc
acggaatttgaagtggcttgtgagagaatgcgagaactggcgaacggaatcaagacaatt
gaatcgaaccattcttcctggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACGTGCCAAGGCGACAACTCTTC 375 523 52 Antisense
GACAACTCTTCCCGCAGAAGTGGAC 579 363 66 Antisense
GTGGACGATGCGATGGGCTACTTCA 539 489 85 Antisense
GCTACTTCAAAAATCTGACGCCACG 41 303 101 Antisense
TGACGCCACGTGTCAAGGACCTTCA 532 567 116 Antisense
GGACCTTCACAAGAGCATGACAAAC 573 523 132 Antisense
CAGTTTCTCTGGCACCCTTGAGAAT 554 75 189 Antisense
GGCACCCTTGAGAATTACTCGCGTC 402 535 199 Antisense
TACTCGCGTCTCGGTGACAAGATCA 613 645 214 Antisense
GTGCCGAAGCTGATGCCGTGAAAGG 22 479 278 Antisense
TTGAATCGAACCATTCTTCCTGGCA 71 705 530 Antisense
Sequence Source Affymetrix Proprietary Database