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[185623_s_at]

Description H12I19.5B /REP_DB=WormBase Gene ID /WP=CE16178 /TR=O45620 /GB=CAB11541.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 35.9
(-0.7)
A 		23.4
(-1.8)
A 		11
(-3)
A 		74.6
(3)
A 		64
B 27.8
(1.1)
A 		9.4
(-3)
A 		21.8
(-0.3)
A 		36.5
(3)
A 		27
C 4.8
(-3)
A 		5.3
(-3)
A 		6.6
(-2.9)
A 		154.1
(3)
P 		149
avr 22.8
(-2.2) 		12.7
(-3) 		13.1
(-3) 		88.4
(3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 8.2
(-2.9)
A 		7.1
(-3)
A 		37.3
(0.7)
A 		56.2
(3)
A 		44.5
(1.6)
A 		37.7
(0.7)
A 		49
B 15.4
(-1.8)
A 		16.9
(-1.6)
A 		5.8
(-3)
A 		44.9
(1.9)
A 		53.5
(3)
A 		28.2
(-0.2)
A 		48
C 25.8
(-0.7)
A 		59.5
(3)
P 		17.8
(-1.5)
A 		7.3
(-2.7)
A 		13.6
(-2)
A 		4.5
(-3)
A 		55
avr 16.5
(-3) 		27.8
(0.3) 		20.3
(-1.9) 		36.1
(2.7) 		37.2
(3) 		23.5
(-1) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 13.1
(3)
A 		5.1
(-1.7)
A 		2.9
(-3)
A 		10.9
(1.7)
A 		10
B 8.9
(3)
A 		2.3
(-3)
A 		5.1
(-0.5)
A 		7.8
(2)
A 		7
C 1.6
(-3)
A 		1.5
(-3)
A 		2.3
(-2.8)
A 		26
(3)
P 		25
avr 7.9
(-0.5) 		3
(-3) 		3.4
(-2.8) 		14.9
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 1.5
(-3)
A 		2.5
(-2.5)
A 		8.1
(0.1)
A 		14.2
(3)
A 		13.4
(2.6)
A 		9.2
(0.6)
A 		13
B 5.4
(-1.8)
A 		5.6
(-1.8)
A 		1.4
(-3)
A 		11.9
(0.1)
A 		21.7
(3)
A 		10.5
(-0.3)
A 		20
C 9.6
(-0.1)
A 		18.2
(3)
P 		4.5
(-1.9)
A 		1.5
(-3)
A 		4.4
(-2)
A 		1.5
(-3)
A 		17
avr 5.5
(-2.4) 		8.8
(-0.1) 		4.7
(-3) 		9.2
(0.2) 		13.2
(3) 		7.1
(-1.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185623_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9310
Sequence Type Exemplar sequence
Representative Public ID H12I19.5B NCBI
Target Description H12I19.5B /REP_DB=WormBase Gene ID /WP=CE16178 /TR=O45620 /GB=CAB11541.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070311(11), NM_070312(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070311 NCBI Caenorhabditis elegans H12I19.5b (H12I19.5) mRNA, complete cds. 11/11 A 
NM_070312 NCBI Caenorhabditis elegans H12I19.5a (H12I19.5) mRNA, complete cds. 11/11 A 
GENEFINDER00000013881 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14148898:14153924:-1 11/11 None
H12I19.5c ENSEMBL cdna:known chromosome:CEL140:IV:14150261:14153296:-1 gene:H12I19.5 11/11 A 
H12I19.5b ENSEMBL cdna:known chromosome:CEL140:IV:14150290:14153296:-1 gene:H12I19.5 11/11 A 
H12I19.5a ENSEMBL cdna:known chromosome:CEL140:IV:14150300:14153330:-1 gene:H12I19.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14150432-14153302(-) 100.0 100.0
Public Domain and Genome References
Ensembl H12I19.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB11541 Hypothetical protein H12I19.5b [Caenorhabditis elegans] ref|NP_502712.1| H12I19.5b [Caenorhabditis elegans] 0.0
blast CAB11542 Hypothetical protein H12I19.5a [Caenorhabditis elegans] ref|NP_502713.1| H12I19.5a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 3.6E-108
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502712.1 7 28-50,77-96,139-161,168-187,244-266,287-309,319-341
NP_502713.1 7 28-50,77-96,139-161,168-187,244-266,287-309,319-341
H12I19.5c 8 28-50,77-96,139-161,168-187,244-266,287-309,319-341,353-370
H12I19.5b 7 28-50,77-96,139-161,168-187,244-266,287-309,319-341
H12I19.5a 7 28-50,77-96,139-161,168-187,244-266,287-309,319-341
GENEFINDER00000013881 7 39-61,97-116,159-181,188-207,264-286,307-329,339-361
Sequence
Target Sequence 
>C. ELEGANS:185623_S_AT
gagagccttcatcggaaatggtccatttatgattatcgaaacttttatgcgccatcatgt
gattatggggatggtgcaggaccacttggttggtgtgagcacactggtctcgataagaga
aacggtaaatttaaatttcttctcattggaaattgttgggcagctaatcatgctagaata
ttttacgatgaatgtaaagtgcaggcaaaacgtatcgtacaattctcggaggcaggttgt
gacccactggtttctcatagatataatgttgaatactgtgttcccgctctagatcggtac
gcggaacaggttgaaaaagaaaaaccagattacctatttttaatgtcaagaatgtttgac
attggagacccgattcctcaaaatgcaacagttctaggttatgatcctatatctcagtca
atgaaaaatcaattaaacaaaatggttaaacatgtcaaaaaaaagatttatattctgacg
tcattgccggcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGCCTTCATCGGAAATGGTCCA 267 395 1213 Antisense
TATCGAAACTTTTATGCGCCATCAT 201 653 1246 Antisense
GGTGCAGGACCACTTGGTTGGTGTG 613 499 1285 Antisense
GTATCGTACAATTCTCGGAGGCAGG 47 453 1424 Antisense
TTGTGACCCACTGGTTTCTCATAGA 420 709 1449 Antisense
AATGTTGAATACTGTGTTCCCGCTC 137 165 1477 Antisense
TTCCCGCTCTAGATCGGTACGCGGA 57 697 1493 Antisense
TTGACATTGGAGACCCGATTCCTCA 255 705 1568 Antisense
GACCCGATTCCTCAAAATGCAACAG 263 381 1579 Antisense
GGTTATGATCCTATATCTCAGTCAA 134 507 1609 Antisense
ATATTCTGACGTCATTGCCGGCAAT 461 19 1682 Antisense
Sequence Source Affymetrix Proprietary Database