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[185622_at]

Description Y106G6H.4 /REP_DB=WormBase Gene ID /WP=CE20414 /TR=Q9XWS3 /GB=CAA21574.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 62      6grp_total > 62      4grp_total > 02      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 464
1 2 3 4 range
A 225.2
(-3)
A 		241.6
(-2.6)
A 		273.3
(-1.8)
A 		469.4
(3)
P 		244
B 239.3
(-3)
A 		313.2
(-1.9)
M 		262.2
(-2.7)
M 		646.8
(3)
P 		408
C 280.8
(-2.2)
P 		241
(-2.8)
P 		222.2
(-3)
A 		685.7
(3)
P 		464
avr 248.4
(-3) 		265.3
(-2.7) 		252.6
(-2.9) 		600.6
(3) 		352

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 251
1 2 3 4 5 6 range
A 200.9
(-1)
A 		270.8
(1.2)
P 		314.6
(2.5)
P 		331.9
(3)
P 		228
(-0.1)
P 		133.2
(-3)
A 		199
B 167.8
(-2.3)
P 		247.7
(-0.4)
P 		384.1
(3)
P 		290.1
(0.7)
P 		258.7
(-0.1)
P 		140.8
(-3)
P 		243
C 228.7
(-1)
A 		277.5
(0.7)
P 		318.8
(2.1)
A 		346.8
(3)
P 		246.3
(-0.4)
P 		169.2
(-3)
P 		178
avr 199.1
(-1.4) 		265.3
(0.7) 		339.2
(3) 		322.9
(2.5) 		244.3
(0) 		147.7
(-3) 		192
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 82
(3)
A 		52.4
(-3)
A 		71.5
(0.9)
A 		68.7
(0.3)
P 		30
B 76.3
(-1.8)
A 		77.4
(-1.7)
M 		60.8
(-3)
M 		137.8
(3)
P 		77
C 93
(0.1)
P 		69.3
(-3)
P 		77.4
(-2)
A 		115.6
(3)
P 		46
avr 83.8
(-0.5) 		66.4
(-3) 		69.9
(-2.5) 		107.4
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 37
(-2.6)
A 		96.3
(3)
P 		68.5
(0.4)
P 		84.2
(1.9)
P 		68.8
(0.4)
P 		32.4
(-3)
A 		64
B 58.4
(-2.3)
P 		82.4
(0.4)
P 		93.3
(1.7)
P 		76.8
(-0.2)
P 		105.1
(3)
P 		52.5
(-3)
P 		53
C 84.8
(3)
A 		84.7
(3)
P 		81.1
(2.2)
A 		69.7
(-0.2)
P 		79.7
(1.9)
P 		56.6
(-3)
P 		28
avr 60.1
(-1.1) 		87.8
(3) 		81
(2) 		76.9
(1.4) 		84.5
(2.5) 		47.2
(-3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185622_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1084
Sequence Type Exemplar sequence
Representative Public ID Y106G6H.4 NCBI
Target Description Y106G6H.4 /REP_DB=WormBase Gene ID /WP=CE20414 /TR=Q9XWS3 /GB=CAA21574.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060328(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060328 NCBI Caenorhabditis elegans Y106G6H.4 (Y106G6H.4) mRNA, complete cds. 11/11 None
SNAP00000001704 ENSEMBL cdna:SNAP chromosome:CEL140:I:10445035:10445831:-1 11/11 None
GENEFINDER00000001726 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10445035:10445831:-1 11/11 None
Y106G6H.4 ENSEMBL cdna:known chromosome:CEL140:I:10445035:10445831:-1 gene:Y106G6H.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10444965-10445762(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y106G6H.4
Entrez Gene 190925 Entrez gene
SwissProt Q9XWS3 EMBL-EBI
WormBase CE20414 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21574 Hypothetical protein Y106G6H.4 [Caenorhabditis elegans] ref|NP_492729.1| Y106G6H.4 [Caenorhabditis elegans] 1.0E-118
blast CAE58941 Hypothetical protein CBG02209 [Caenorhabditis briggsae] 2.0E-76
blast CAB04312 Hypothetical protein F36D1.1 [Caenorhabditis elegans] ref|NP_492896.1| F36D1.1 [Caenorhabditis elegans] 3.0E-9
Sequence
Target Sequence 
>C. ELEGANS:185622_AT
acatgacacatgttgttcctcagcaaaaagaagaggttcagtacatgatgcgtcaagtaa
cagatagtgttagatttgcaatgtgtgaagcaattgcacacagaccgggtctttgggatt
caacacgagaaaaagtgagctcggcagcacggaaaaatctctttgctgaagttgttgagg
tgattaatcaacagttcgtgttgagccctccgctcacaatcgaagaaatcgaaaagcatt
ggaaaaatctgaaagacacatacgtgaaaactcgacggaagttaacatttgatcatgatg
gatgccctatacgaccgaaatggaagttttttgattcgctcatgttcctggacagtgtga
atcaaaacgattttgtgatgaaaaaacgtccgatgcaattccagggacagccgtacgatt
tataccaaggtccctcttctaagaaagagaaactagaagaaatgccatctgacgagtaca
tggaattctgtcgatcgttgtacctcccattgaaagaaataggatacaaggatcgcatac
actggctgaagatccaaaagtccatccgtgacatcgtttacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATGACACATGTTGTTCCTCAGCA 474 107 89 Antisense
CAGACCGGGTCTTTGGGATTCAACA 481 197 189 Antisense
CCCTCCGCTCACAATCGAAGAAATC 334 259 294 Antisense
TGATGGATGCCCTATACGACCGAAA 352 567 384 Antisense
ATTCGCTCATGTTCCTGGACAGTGT 394 9 422 Antisense
AAAAACGTCCGATGCAATTCCAGGG 18 111 470 Antisense
ATTCCAGGGACAGCCGTACGATTTA 633 3 486 Antisense
GATTTATACCAAGGTCCCTCTTCTA 60 429 505 Antisense
GGAATTCTGTCGATCGTTGTACCTC 530 531 570 Antisense
CAAGGATCGCATACACTGGCTGAAG 407 183 615 Antisense
AAGTCCATCCGTGACATCGTTTACG 611 157 646 Antisense
Sequence Source Affymetrix Proprietary Database