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[185621_at]

Description C28C12.2 /REP_DB=WormBase Gene ID /WP=CE04109 /TR=Q18282 /GB=AAB37545.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 2.4
(-3)
A 		12.6
(-2.4)
A 		15.9
(-2.2)
A 		103.3
(3)
P 		101
B 3
(-3)
A 		6.9
(-2.6)
A 		4.8
(-2.8)
A 		67.6
(3)
A 		65
C 4
(-3)
A 		44.3
(3)
A 		10.2
(-2.1)
A 		39.9
(2.3)
A 		40
avr 3.1
(-3) 		21.3
(-1.4) 		10.3
(-2.4) 		70.3
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3061
1 2 3 4 5 6 range
A 9.2
(-3)
A 		5.7
(-3)
A 		57.5
(-2.9)
A 		204.9
(-2.6)
P 		1968.1
(0.9)
P 		3012.9
(3)
P 		3007
B 5.2
(-3)
A 		6
(-3)
A 		38.6
(-2.9)
A 		193.6
(-2.6)
P 		2297.9
(1.7)
P 		2946.5
(3)
P 		2941
C 15.1
(-3)
A 		5.4
(-3)
A 		51.7
(-2.9)
A 		181.6
(-2.7)
P 		1923.4
(0.8)
P 		3066.5
(3)
P 		3061
avr 9.8
(-3) 		5.7
(-3) 		49.3
(-2.9) 		193.4
(-2.6) 		2063.1
(1.1) 		3008.6
(3) 		3003
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 0.9
(-3)
A 		2.7
(-2.2)
A 		4.1
(-1.6)
A 		15.1
(3)
P 		14
B 1
(-3)
A 		1.7
(-2.7)
A 		1.1
(-3)
A 		14.4
(3)
A 		13
C 1.3
(-3)
A 		12.7
(3)
A 		3.6
(-1.8)
A 		6.7
(-0.2)
A 		11
avr 1.1
(-3) 		5.7
(-0.5) 		2.9
(-2) 		12.1
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1097
1 2 3 4 5 6 range
A 1.7
(-3)
A 		2
(-3)
A 		12.5
(-2.9)
A 		52
(-2.6)
P 		593.9
(1.9)
P 		733.5
(3)
P 		732
B 1.8
(-3)
A 		2
(-3)
A 		9.4
(-3)
A 		51.3
(-2.7)
P 		933.6
(2.1)
P 		1098.7
(3)
P 		1097
C 5.6
(-3)
A 		1.6
(-3)
A 		13.2
(-2.9)
A 		36.5
(-2.8)
P 		622.4
(0.6)
P 		1026.5
(3)
P 		1025
avr 3
(-3) 		1.9
(-3) 		11.7
(-2.9) 		46.6
(-2.7) 		716.6
(1.5) 		952.9
(3) 		951
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185621_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9617
Sequence Type Exemplar sequence
Representative Public ID C28C12.2 NCBI
Target Description C28C12.2 /REP_DB=WormBase Gene ID /WP=CE04109 /TR=Q18282 /GB=AAB37545.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069052(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069052 NCBI Caenorhabditis elegans C28C12.2 (C28C12.2) mRNA, complete cds. 11/11 None
SNAP00000012170 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8499292:8499953:1 11/11 None
GENEFINDER00000012180 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8499292:8499953:1 11/11 None
C28C12.2 ENSEMBL cdna:known chromosome:CEL140:IV:8499301:8499994:1 gene:C28C12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8499330-8499959(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C28C12.2
Entrez Gene 177655 Entrez gene
SwissProt Q18282 EMBL-EBI
WormBase CE04109 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37545 Hypothetical protein C28C12.2 [Caenorhabditis elegans] ref|NP_501453.1| C28C12.2 [Caenorhabditis elegans] 2.0E-96
Sequence
Target Sequence 
>C. ELEGANS:185621_AT
atcggttcgagtttgccggatcttcgctcagagacaggattgggtcaattctatccatgg
atcagaccccacgtccggcaactcgcgcaaatatcttcatgggacggacaccgacaccgg
ccaggcaccttccggagagccgaagaatgtttgtgccggattacacttcaacgcctgcac
ctacggctcctcgacaggaatttcgcttcgaagacttgtctcggatcgtggcacctccaa
ttgagcaaaccttcattcagctggattccgatggagagctcactcttcccgctgaatcat
caattgcagtgtctccaccaccgcgaccatcttctgagcctctccgccatctcagccaag
tctcgctgtcagctcgcccagcttcaacggagcctgtaagaagagacgtacactggagag
tgcatccttcggcaaagatccgaaaatgcacagtgccgaagacaccatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGGTTCGAGTTTGCCGGATCTTC 8 9 74 Antisense
GGCAACTCGCGCAAATATCTTCATG 238 535 150 Antisense
TATCTTCATGGGACGGACACCGACA 574 659 165 Antisense
TTGTGCCGGATTACACTTCAACGCC 289 709 224 Antisense
GGCTCCTCGACAGGAATTTCGCTTC 210 539 258 Antisense
CGAAGACTTGTCTCGGATCGTGGCA 280 253 282 Antisense
GTGGCACCTCCAATTGAGCAAACCT 594 491 301 Antisense
GCAAACCTTCATTCAGCTGGATTCC 110 319 318 Antisense
AATCATCAATTGCAGTGTCTCCACC 320 171 368 Antisense
ACACTGGAGAGTGCATCCTTCGGCA 710 109 483 Antisense
ATGCACAGTGCCGAAGACACCATCC 605 43 519 Antisense
Sequence Source Affymetrix Proprietary Database