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[185619_s_at]

Description C23H5.8A /REP_DB=WormBase Gene ID /WP=CE17440 /TR=O61828 /GB=AAC17535.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 62      6grp_highest_nonorm > 43      6grp_total > 62      4grp_total > 56      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1464
1 2 3 4 range
A 747.9
(0.1)
P 		578.5
(-0.6)
P 		1439.5
(3)
P 		8.5
(-3)
A 		1431
B 624.9
(0.7)
P 		560
(0.3)
P 		1010.2
(3)
P 		3.3
(-3)
A 		1007
C 754.7
(0.1)
P 		551
(-0.8)
P 		1467.6
(3)
P 		14.6
(-3)
A 		1453
avr 709.2
(0.2) 		563.2
(-0.4) 		1305.8
(3) 		8.8
(-3) 		1297

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1322
1 2 3 4 5 6 range
A 610.6
(-3)
P 		945.3
(-1.5)
P 		1932.5
(3)
P 		1495.7
(1)
P 		878.2
(-1.8)
P 		865.7
(-1.8)
P 		1322
B 787.1
(-3)
P 		1140.2
(-0.8)
P 		1764
(3)
P 		1242.5
(-0.2)
P 		1283.8
(0.1)
P 		999
(-1.7)
P 		977
C 712.4
(-3)
P 		1077.3
(-0.5)
P 		1331
(1.3)
P 		1572
(3)
P 		907.6
(-1.6)
P 		904.6
(-1.7)
P 		860
avr 703.4
(-3) 		1054.3
(-0.8) 		1675.8
(3) 		1436.7
(1.5) 		1023.2
(-1) 		923.1
(-1.6) 		972
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 511
1 2 3 4 range
A 272.3
(1.3)
P 		125.6
(-1)
P 		376.3
(3)
P 		1.2
(-3)
A 		375
B 199.3
(2.1)
P 		138.3
(0.5)
P 		234.1
(3)
P 		0.7
(-3)
A 		233
C 249.8
(-0.1)
P 		158.4
(-1.2)
P 		511.5
(3)
P 		2.5
(-3)
A 		509
avr 240.5
(0.8) 		140.8
(-0.8) 		374
(3) 		1.5
(-3) 		373

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 409
1 2 3 4 5 6 range
A 112.6
(-3)
P 		336.2
(1.4)
P 		420.9
(3)
P 		379.3
(2.2)
P 		265
(-0)
P 		210.8
(-1.1)
P 		308
B 273.9
(-3)
P 		379.5
(-0.4)
P 		428.3
(0.7)
P 		329.1
(-1.7)
P 		521.6
(3)
P 		372.5
(-0.6)
P 		248
C 264
(-3)
P 		328.7
(2.2)
P 		338.8
(3)
P 		316.1
(1.2)
P 		293.7
(-0.6)
P 		302.8
(0.1)
P 		75
avr 216.8
(-3) 		348.1
(1.4) 		396
(3) 		341.5
(1.2) 		360.1
(1.8) 		295.4
(-0.4) 		179
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185619_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11249
Sequence Type Exemplar sequence
Representative Public ID C23H5.8A NCBI
Target Description C23H5.8A /REP_DB=WormBase Gene ID /WP=CE17440 /TR=O61828 /GB=AAC17535.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067762(11), NM_067763(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067762 NCBI Caenorhabditis elegans C23H5.8a (C23H5.8) mRNA, complete cds. 11/11 A 
NM_067763 NCBI Caenorhabditis elegans C23H5.8b (C23H5.8) mRNA, complete cds. 11/11 None
GENEFINDER00000034543 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2103815:2113353:-1 11/11 None
C23H5.8a ENSEMBL cdna:known chromosome:CEL140:IV:2111903:2113392:-1 gene:C23H5.8 11/11 A 
C23H5.8b ENSEMBL cdna:known chromosome:CEL140:IV:2111963:2113371:-1 gene:C23H5.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2111951-2113359(-) 100.0 100.0
Public Domain and Genome References
Ensembl C23H5.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17534 Hypothetical protein C23H5.7 [Caenorhabditis elegans] ref|NP_500162.1| C23H5.7 [Caenorhabditis elegans] 0.0
blast CAE74702 Hypothetical protein CBG22517 [Caenorhabditis briggsae] 0.0
blast AAF36062 Hypothetical protein Y76B12C.1 [Caenorhabditis elegans] ref|NP_500158.1| Y76B12C.1 [Caenorhabditis elegans] 0.0
blast AAC17535 Hypothetical protein C23H5.8a [Caenorhabditis elegans] ref|NP_500163.1| C23H5.8a [Caenorhabditis elegans] 1.0E-116
blast AAC17536 Hypothetical protein C23H5.8b [Caenorhabditis elegans] ref|NP_500164.1| C23H5.8b [Caenorhabditis elegans] 2.0E-89
blast AAC17535 Hypothetical protein C23H5.8a [Caenorhabditis elegans] ref|NP_500163.1| C23H5.8a [Caenorhabditis elegans] 3.0E-87
blast AAC17536 Hypothetical protein C23H5.8b [Caenorhabditis elegans] ref|NP_500164.1| C23H5.8b [Caenorhabditis elegans] 6.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR005821 EMBL-EBI Ion transport protein 5.2E-13
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 3.9E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000034543 4 249-271,278-300,382-404,516-538
Sequence
Target Sequence 
>C. ELEGANS:185619_S_AT
gtcgattacaacgatccgaacacccatctgaatgccagtgtattcttggttgaggacgcc
tggtgcagtgtttatgttgggattcgtccaaaattgggattcgactggttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGATTACAACGATCCGAACACCC 654 471 484 Antisense
CCGAACACCCATCTGAATGCCAGTG 383 263 499 Antisense
CACCCATCTGAATGCCAGTGTATTC 291 201 504 Antisense
GAATGCCAGTGTATTCTTGGTTGAG 124 331 513 Antisense
GTATTCTTGGTTGAGGACGCCTGGT 127 451 523 Antisense
TCTTGGTTGAGGACGCCTGGTGCAG 342 615 527 Antisense
TGAGGACGCCTGGTGCAGTGTTTAT 123 567 534 Antisense
GACGCCTGGTGCAGTGTTTATGTTG 419 381 538 Antisense
GCAGTGTTTATGTTGGGATTCGTCC 638 311 548 Antisense
GGGATTCGTCCAAAATTGGGATTCG 694 495 562 Antisense
TCCAAAATTGGGATTCGACTGGTTG 570 585 570 Antisense
Sequence Source Affymetrix Proprietary Database